Research Output

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Conference contribution
2019

Predicting response to the antidepressant bupropion using pretreatment fMRI

Nguyen, K. P., Fatt, C. C., Treacher, A., Mellema, C., Trivedi, M. H. & Montillo, A., Jan 1 2019, Predictive Intelligence in Medicine - 2nd International Workshop, PRIME 2019, Held in Conjunction with MICCAI 2019, Proceedings. Rekik, I., Adeli, E. & Park, S. H. (eds.). Springer, p. 53-62 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11843 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sensitivity of derived clinical biomarkers to rs-fmri preprocessing software versions

Nguyen, K. P., Fatt, C. C., Mellema, C., Trivedi, M. H. & Montillo, A., Apr 2019, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 1581-1584 4 p. 8759526. (Proceedings - International Symposium on Biomedical Imaging; vol. 2019-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

A sparse-to-dense method for 3D optical flow estimation in 3D light-microscopy image sequences

Manandhar, S., Bouthemy, P., Welf, E., Roudot, P. & Kervrann, C., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 952-956 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

Breast image feature learning with adaptive deconvolutional networks

Jamieson, A. R., Drukker, K. & Giger, M. L., Dec 1 2012, Medical Imaging 2012: Computer-Aided Diagnosis. 831506. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8315).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

31 Scopus citations
2011

Exploring deep parametric embeddings for breast CADx

Jamieson, A. R., Alam, R. & Giger, M. L., May 13 2011, Medical Imaging 2011: Computer-Aided Diagnosis. 79630Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7963).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2008

A control engineering model for hemostasis following blood vessel injury

Welf, E. S., Naik, U. P. & Ogunnaike, B. A., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computational investigation of how integrin clustering affects cell adhesion and migration

Welf, E. S., Naik, U. P. & Ogunnaike, B. A., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Experimental investigation of the relationship between integrin clustering and focal adhesion kinase phosphorylation

Welf, E. S., Ogunnaike, B. A. & Naik, U. P., Dec 1 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Quantitative analysis of border cell migration

Chen, S. C. & Danuser, G., Dec 1 2008, 2008 42nd Asilomar Conference on Signals, Systems and Computers, ASILOMAR 2008. p. 56-60 5 p. 5074360. (Conference Record - Asilomar Conference on Signals, Systems and Computers).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2006

A two-stage method for lesion segmentation on digital mammograms

Yuan, Y., Giger, M. L., Suzuki, K., Li, H. & Jamieson, A. R., Jun 22 2006, Medical Imaging 2006: Image Processing. 61443W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6144 II).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Comparison of computerized image analyses for digitized screen-film mammograms and full-field digital mammography images

Li, H., Giger, M. L., Yuan, Y., Lan, L., Suzuki, K., Jamieson, A., Yarusso, L., Nishikawa, R. M. & Sennett, C., Jan 1 2006, Digital Mammography - 8th International Workshop, IWDM 2006, Proceedings. Springer Verlag, p. 569-575 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4046 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Computer vision for systems biology

Danuser, G., Nov 17 2006, 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings. p. 241-244 4 p. 1624897. (2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings; vol. 2006).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2005

A diffusion-reaction model for integrin clustering in response to cell adhesion

Welf, E. S., Naik, U. P. & Ogunnaike, B. A., Dec 1 2005, 05AIChE: 2005 AIChE Annual Meeting and Fall Showcase, Conference Proceedings. p. 8487-8494 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2004

Measurement of the strain field in a micrometer-sized region at a notch tip

Mazza, E., Dual, J., Musil, C. R., Danuser, G. & Vetterli, M., 2004, Proceedings of SPIE - The International Society for Optical Engineering. Vol. 2782. p. 160-168 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Observing deformations of 20 nanometer with a low-numerical-aperture light microscope

Danuser, G. & Mazza, E., 2004, Proceedings of SPIE - The International Society for Optical Engineering. Vol. 2782. p. 180-191 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Super-resolution tracking of weak fluorescent markers in 3D: Application in dissecting the mechanics of chromosome segregation using fluorescence imaging and molecular genetics in yeast

Danuser, G., Dec 1 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano. p. 61-64 4 p. (2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2001

One-step calibration of specimen induced focal shifts and spherical aberration for quantitative 3D microscopy: Approach and first results

Thomann, D., Stüssi, E. & Danuser, G., 2001, Proceedings of SPIE - The International Society for Optical Engineering. Conchello, J., Cogswell, C. J. & Wilson, T. (eds.). Vol. 4261. p. 69-80 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2000

Super-resolution stereo light microscopy for real-time tasks using normal flow and geometric constraints

Danuser, G., 2000, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, Vol. 3919. p. 129-140 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations
1997

Deformable multi template matching with application to portal images

Berger, M. & Danuser, G., 1997, Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Anon (ed.). p. 374-379 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

11 Scopus citations
1995

Calibration procedure for light-optical and scanning electron stereo-microscopy in micro- and nanorobotics

Danuser, G. & Kuebler, O., Jan 1 1995, Proceedings of SPIE - The International Society for Optical Engineering. Wilson, T. & Cogswell, C. J. (eds.). p. 174-185 12 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 2412).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

13 Scopus citations