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Letter
2017

Revisit linear regression-based deconvolution methods for tumor gene expression data

Li, B., Liu, J. S. & Liu, X. S., Jul 5 2017, In : Genome Biology. 18, 1, 127.

Research output: Contribution to journalLetter

16 Scopus citations

Ultrasensitive detection of TCR hypervariable-region sequences in solid-tissue RNA-seq data

Li, B., Li, T., Wang, B., Dou, R., Zhang, J., Liu, J. S. & Liu, X. S., Mar 30 2017, In : Nature Genetics. 49, 4, p. 483-484 2 p.

Research output: Contribution to journalLetter

23 Scopus citations
2014

A simple image correction method for high-throughput microscopy

Coster, A. D., Wichaidit, C., Rajaram, S., Altschuler, S. J. & Wu, L. F., Jun 2014, In : Nature methods. 11, 6, 1 p.

Research output: Contribution to journalLetter

6 Scopus citations

Danuser replies:

Danuser, G., Mar 2014, In : Nature methods. 11, 3, 1 p.

Research output: Contribution to journalLetter

3 Scopus citations
2012

An encyclopedia of mouse DNA elements (Mouse ENCODE)

Stamatoyannopoulos, J. A., Snyder, M., Hardison, R., Ren, B., Gingeras, T., Gilbert, D. M., Groudine, M., Bender, M., Kaul, R., Canfield, T., Giste, E., Johnson, A., Zhang, M., Balasundaram, G., Byron, R., Roach, V., Sabo, P. J., Sandstrom, R., Stehling, A. S., Thurman, R. E. & 66 others, Weissman, S. M., Cayting, P., Hariharan, M., Lian, J., Cheng, Y., Landt, S. G., Ma, Z., Wold, B. J., Dekker, J., Crawford, G. E., Keller, C. A., Wu, W., Morrissey, C., Kumar, S. A., Mishra, T., Jain, D., Byrska-Bishop, M., Blankenberg, D., Lajoiel, B. R., Jain, G., Sanyal, A., Chen, K. B., Denas, O., Taylor, J., Blobel, G. A., Weiss, M. J., Pimkin, M., Deng, W., Marinov, G. K., Williams, B. A., Fisher-Aylor, K. I., Desalvo, G., Kiralusha, A., Trout, D., Amrhein, H., Mortazavi, A., Edsall, L., McCleary, D., Kuan, S., Shen, Y., Yue, F., Ye, Z., Davis, C. A., Zaleski, C., Jha, S., Xue, C., Dobin, A., Lin, W., Fastuca, M., Wang, H., Guigo, R., Djebali, S., Lagarde, J., Ryba, T., Sasaki, T., Malladi, V. S., Cline, M. S., Kirkup, V. M., Learned, K., Rosenbloom, K. R., Kent, W. J., Feingold, E. A., Good, P. J., Pazin, M., Lowdon, R. F. & Adams, L. B., Aug 13 2012, In : Genome biology. 13, 8, 418.

Research output: Contribution to journalLetter

Open Access
271 Scopus citations

PhenoRipper: Software for rapidly profiling microscopy images

Rajaram, S., Pavie, B., Wu, L. F. & Altschuler, S. J., Jul 1 2012, In : Nature methods. 9, 7, p. 635-637 3 p.

Research output: Contribution to journalLetter

44 Scopus citations

SimuCell: A flexible framework for creating synthetic microscopy images

Rajaram, S., Pavie, B., Hac, N. E. F., Altschuler, S. J. & Wu, L. F., Jul 1 2012, In : Nature methods. 9, 7, p. 634-635 2 p.

Research output: Contribution to journalLetter

26 Scopus citations