Research Output

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Conference contribution
2011

SPATA: A highly accurate GUI tool for de novo transcriptome assembly

Nguyen, T. C., Zhao, Z. & Zhu, D., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 1051-1053 3 p. 6112557. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

SPATA: A seeding and patching algorithm for de novo transcriptome assembly

Zhao, Z., Nguyen, T. C., Deng, N., Johnson, K. M. & Zhu, D., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 26-33 8 p. 6112351. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2010

O((logn)2) time online approximation schemes for bin packing and subset sum problems

Ding, L., Fu, B., Fu, Y., Lu, Z. & Zhao, Z., Aug 27 2010, Frontiers in Algorithmics - 4th International Workshop, FAW 2010, Proceedings. p. 250-261 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6213 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Transcriptional silencing of fetal hemoglobin by BCL11A

Sankaran, V. G., Xu, J. & Orkin, S. H., Aug 2010, Cooley's Anemia: Ninth Symposium. Blackwell Publishing Inc., p. 64-68 5 p. (Annals of the New York Academy of Sciences; vol. 1202).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

29 Scopus citations
2009

An information theoretic viewpoint on haplotype reconstruction from SNP fragments

Huimin, C. & Zhiyu, Z., Dec 31 2009, 3rd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2009. 5162329. (3rd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2008

Linear time probabilistic algorithms for the singular haplotype reconstruction problem from SNP fragments

Chen, Z., Fu, B., Schweller, R., Yang, B., Zhao, Z. & Zhu, B., Dec 1 2008, Proceedings of 6th Asia-Pacific Bioinformatics Conference, APBC 2008. p. 333-342 10 p. (Series on Advances in Bioinformatics and Computational Biology; vol. 6).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

New algorithm and web server for finding proteins with similar 3D structures

Lu, Z., Zhao, Z., Garcia, S. & Fu, B., Dec 1 2008, Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008. p. 674-680 7 p. (Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Separating sublinear time computations by approximate diameter

Fu, B. & Zhao, Z., Sep 22 2008, Combinatorial Optimization and Applications - Second International Conference, COCOA 2008, Proceedings. p. 79-88 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5165 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2007

Endoplasmic reticulum stress

Bánhegyi, G., Baumeister, P., Benedetti, A., Dong, D., Fu, Y., Lee, A. S., Li, J., Mao, C., Margittai, É., Ni, M., Paschen, W., Piccirella, S., Senesi, S., Sitia, R., Wang, M. & Yang, W., Oct 2007, Stress Responses. Blackwell Publishing Inc., p. 58-71 14 p. (Annals of the New York Academy of Sciences; vol. 1113).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

102 Scopus citations

Non-breaking similarity of genomes with gene repetitions

Chen, Z., Fu, B., Xu, J., Yang, B., Zhao, Z. & Zhu, B., Dec 1 2007, Combinatorial Pattern Matching - 18th Annual Symposium, CPM 2007, Proceedings. p. 119-130 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4580 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

18 Scopus citations