Clinical Sciences - QBRC

Research Output 2003 2019

2019

A Bayesian hidden Potts mixture model for analyzing lung cancer pathology images

Li, Q., Wang, X., Liang, F., Yi, F., Xie, Y., Gazdar, A. & Xiao, G., Oct 1 2019, In : Biostatistics (Oxford, England). 20, 4, p. 565-581 17 p.

Research output: Contribution to journalArticle

Lung Cancer
Potts Model
Mixture Model
Cell
Tumor
1 Citation (Scopus)

A bayesian mark interaction model for analysis of tumor pathology images

Li, B. Q., Wang, X., Liang, F. & Xiao, G., Sep 2019, In : Annals of Applied Statistics. 13, 3, p. 1708-1732 25 p.

Research output: Contribution to journalArticle

Open Access
Pathology
Tumors
Tumor
Spatial Correlation
Cancer
7 Citations (Scopus)

A comparative study of rank aggregation methods for partial and top ranked lists in genomic applications

Li, X., Wang, X. & Xiao, G., Jan 18 2019, In : Briefings in Bioinformatics. 20, 1, p. 178-189 12 p.

Research output: Contribution to journalArticle

Agglomeration
Cells
Non-Small Cell Lung Carcinoma
Guidelines
Research

Artificial intelligence in lung cancer pathology image analysis

Wang, S., Yang, D. M., Rong, R., Zhan, X., Fujimoto, J., Liu, H., Minna, J., Wistuba, I. I., Xie, Y. & Xiao, G., Nov 2019, In : Cancers. 11, 11, 1673.

Research output: Contribution to journalReview article

Open Access
Artificial Intelligence
Lung Neoplasms
Pathology
Learning
Technology

Aryl Sulfonamides Degrade RBM39 and RBM23 by Recruitment to CRL4-DCAF15

Ting, T. C., Goralski, M., Klein, K., Wang, B., Kim, J., Xie, Y. & Nijhawan, D., Nov 5 2019, In : Cell Reports. 29, 6, p. 1499-1510.e6

Research output: Contribution to journalArticle

Open Access
Sulfonamides
Ubiquitination
Degradation
RNA
Mutagenesis

Assessment of circularized E7 RNA, GLUT1, and PD-L1 in anal squamous cell carcinoma

Chamseddin, B. H., Lee, E. E., Kim, J., Zhan, X., Yang, R., Murphy, K. M., Lewis, C., Hosler, G. A., Hammer, S. T. & Wang, R. C., Oct 1 2019, In : Oncotarget. 10, 57, p. 5958-5969 12 p.

Research output: Contribution to journalArticle

Facilitative Glucose Transport Proteins
Squamous Cell Carcinoma
RNA
Ligands
Survival
35 Citations (Scopus)

Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use

23andMe Research Team & HUNT All-In Psychiatry, Feb 1 2019, In : Nature genetics. 51, 2, p. 237-244 8 p.

Research output: Contribution to journalLetter

Tobacco Use
Alcohols
Tobacco Use Cessation
Genetic Association Studies
Synaptic Transmission

Author Correction: CPS1 maintains pyrimidine pools and DNA synthesis in KRAS/LKB1-mutant lung cancer cells (Nature, (2017), 546, 7656, (168-172), 10.1038/nature22359)

Kim, J., Hu, Z., Cai, L., Li, K., Choi, E., Faubert, B., Bezwada, D., Rodriguez-Canales, J., Villalobos, P., Lin, Y. F., Ni, M., Huffman, K. E., Girard, L., Byers, L. A., Unsal-Kacmaz, K., Peña, C. G., Heymach, J. V., Wauters, E., Vansteenkiste, J., Castrillon, D. H. & 6 others, Chen, B. P. C., Wistuba, I., Lambrechts, D., Xu, J., Minna, J. D. & DeBerardinis, R. J., May 16 2019, In : Nature. 569, 7756, p. E4

Research output: Contribution to journalComment/debate

Open Access
Carbamyl Phosphate
Lung Neoplasms
DNA
pyrimidine
phosphorylethanolamine

Correction: LCE: an open web portal to explore gene expression and clinical associations in lung cancer (Oncogene, (2019), 38, 14, (2551-2564), 10.1038/s41388-018-0588-2)

Cai, L., Lin, S. Y., Girard, L., Zhou, Y., Yang, L., Ci, B., Zhou, Q., Luo, D., Yao, B., Tang, H., Allen, J., Huffman, K., Gazdar, A. F., Heymach, J., Wistuba, I., Xiao, G., Minna, J. & Xie, Y., Jan 1 2019, (Accepted/In press) In : Oncogene.

Research output: Contribution to journalComment/debate

Oncogenes
Publications
Lung Neoplasms
Gene Expression

DEFOR: Depth- and frequency-based somatic copy number alteration detector

Zhang, H., Zhan, X., Brugarolas, J. & Xie, Y., Oct 1 2019, In : Bioinformatics. 35, 19, p. 3824-3825 2 p.

Research output: Contribution to journalArticle

Open Access
Exome
Tumors
Sequencing
Detector
Detectors

Development and Validation of a Nomogram Prognostic Model for Patients With Advanced Non-Small-Cell Lung Cancer

Wang, T., Lu, R., Lai, S., Schiller, J. H., Zhou, F. L., Ci, B., Wang, S., Gao, X., Yao, B., Gerber, D. E., Johnson, D. H., Xiao, G. & Xie, Y., Apr 1 2019, In : Cancer Informatics. 18

Research output: Contribution to journalArticle

Open Access
Nomograms
Non-Small Cell Lung Carcinoma
ROC Curve
Neoplasm Metastasis
Survival

Development and Validation of a Pathology Image Analysis-based Predictive Model for Lung Adenocarcinoma Prognosis - A Multi-cohort Study

Luo, X., Yin, S., Yang, L., Fujimoto, J., Yang, Y., Moran, C., Kalhor, N., Weissferdt, A., Xie, Y., Gazdar, A. F., Minna, J. D., Wistuba, I. I., Mao, Y. & Xiao, G., Dec 1 2019, In : Scientific Reports. 9, 1, 6886.

Research output: Contribution to journalArticle

Open Access
Cohort Studies
Pathology
Adenocarcinoma
Lung
Neoplasms

DIGREM: an integrated web-based platform for detecting effective multi-drug combinations

Zhang, M., Lee, S., Yao, B., Xiao, G., Xu, L. & Xie, Y., May 15 2019, In : Bioinformatics (Oxford, England). 35, 10, p. 1792-1794 3 p.

Research output: Contribution to journalArticle

Drug Combinations
Web-based
Drugs
Pharmaceutical Preparations
Bioinformatics

Engineering Forward Genetics into Cultured Cancer Cells for Chemical Target Identification

Povedano, J. M., Liou, J., Wei, D., Srivatsav, A., Kim, J., Xie, Y., Nijhawan, D. & McFadden, D. G., Sep 19 2019, In : Cell Chemical Biology. 26, 9, p. 1315-1321.e3

Research output: Contribution to journalArticle

DNA Mismatch Repair
Genetic Engineering
Cultured Cells
Cells
Repair
6 Citations (Scopus)

Exome Chip Meta-analysis Fine Maps Causal Variants and Elucidates the Genetic Architecture of Rare Coding Variants in Smoking and Alcohol Use

CHD Exome+ Consortium & Consortium for Genetics of Smoking Behaviour, Jun 1 2019, In : Biological Psychiatry. 85, 11, p. 946-955 10 p.

Research output: Contribution to journalArticle

Exome
Meta-Analysis
Smoking
Alcohols
Phenotype
2 Citations (Scopus)

Functional Assessment of Lipoyltransferase-1 Deficiency in Cells, Mice, and Humans

Ni, M., Solmonson, A., Pan, C., Yang, C., Li, D., Notzon, A., Cai, L., Guevara, G., Zacharias, L. G., Faubert, B., Vu, H. S., Jiang, L., Ko, B., Morales, N. M., Pei, J., Vale, G., Rakheja, D., Grishin, N. V., McDonald, J. G., Gotway, G. K. & 3 others, McNutt, M. C., Pascual, J. M. & DeBerardinis, R. J., Apr 30 2019, In : Cell Reports. 27, 5, p. 1376-1386.e6

Research output: Contribution to journalArticle

Open Access
Functional assessment
Inborn Errors Metabolism
Metabolomics
Genomics
Metabolism
1 Citation (Scopus)

GeNeCK: A web server for gene network construction and visualization

Zhang, M., Li, Q., Yu, D., Yao, B., Guo, W., Xie, Y. & Xiao, G., Jan 7 2019, In : BMC Bioinformatics. 20, 1, 12.

Research output: Contribution to journalArticle

Gene Networks
Gene Regulatory Networks
Web Server
Servers
Visualization
1 Citation (Scopus)

Identification of De Novo Enhancers Activated by TGFβ to Drive Expression of CDKN2A and B in HeLa Cells

Liu, Y. T., Xu, L., Bennett, L., Hooks, J. C., Liu, J., Zhou, Q., Liem, P., Zheng, Y. & Skapek, S. X., Sep 1 2019, In : Molecular cancer research : MCR. 17, 9, p. 1854-1866 13 p.

Research output: Contribution to journalArticle

HeLa Cells
Neoplasms
Messenger RNA
Clustered Regularly Interspaced Short Palindromic Repeats
Gene Dosage

Identifying genes with tri-modal association with survival and tumor grade in cancer patients

Zhang, M., Wang, T., Sirianni, R., Shaul, P. W. & Xie, Y., Jan 8 2019, In : BMC Bioinformatics. 20, 1, 13.

Research output: Contribution to journalArticle

Tumors
Tumor
Cancer
Genes
Gene

LMBR1L regulates lymphopoiesis through Wnt/β-catenin signaling

Choi, J. H., Zhong, X., McAlpine, W., Liao, T. C., Zhang Ph.D., D-W., Fang, B., Russell, J., Ludwig, S., Nair-Gill, E., Zhang, Z., Wang, K. W., Misawa, T., Zhan, X., Choi, M., Wang, T., Li, X., Tang, M., Sun, Q., Yu, L., Murray, A. R. & 2 others, Moresco, E. Y. & Beutler, B., Jan 1 2019, In : Science. 364, 6440, eaau0812.

Research output: Contribution to journalArticle

Lymphopoiesis
Catenins
Wnt2 Protein
Ethylnitrosourea
Wnt Signaling Pathway
2 Citations (Scopus)

Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci

Understanding Society Scientific Group, EPIC-CVD, GSCAN, Consortium for Genetics of Smoking Behaviour, CHD Exome+ consortium, Jan 1 2019, (Accepted/In press) In : Molecular Psychiatry.

Research output: Contribution to journalArticle

Genetic Loci
Meta-Analysis
Smoking
Nucleotides
Exome
1 Citation (Scopus)

Mobile Device Applications for Electronic Patient Portals in Oncology

Pho, K. K., Lu, R., Gates, S., Cai, J., Xie, D., Xie, Y., Lee, S. C. & Gerber, D. E., Feb 1 2019, In : JCO clinical cancer informatics. 3, p. 1-8 8 p.

Research output: Contribution to journalArticle

Mobile Applications
Equipment and Supplies
Patient Portals
Technology
Electronic Health Records
2 Citations (Scopus)

Pathology Image Analysis Using Segmentation Deep Learning Algorithms

Wang, S., Yang, D. M., Rong, R., Zhan, X. & Xiao, G., Sep 1 2019, In : American Journal of Pathology. 189, 9, p. 1686-1698 13 p.

Research output: Contribution to journalReview article

Learning
Pathology
Clinical Pathology
Software
Neoplasm Metastasis
5 Citations (Scopus)

Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution

T2D-Genes Consortium, The MAGIC Investigators, CHD Exome+ Consortium, Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) Consortium, EPIC-CVD Consortium, ExomeBP Consortium, Global Lipids Genetic Consortium, GoT2D Genes Consortium, InterAct & ReproGen Consortium, Mar 1 2019, In : Nature genetics. 51, 3, p. 452-469 18 p.

Research output: Contribution to journalArticle

Body Fat Distribution
Homeostasis
Lipids
Fats
Genes

Publisher Correction: Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity (Nature Genetics, (2018), 50, 1, (26-41), 10.1038/s41588-017-0011-x)

CHD Exome+ Consortium, EPIC-CVD Consortium, ExomeBP Consortium, Global Lipids Genetic Consortium, GoT2D Genes Consortium, EPIC-InterAct Consortium, INTERVAL Study, ReproGen Consortium, T2D-Genes Consortium, The MAGIC Investigators & Understanding Society Scientific Group, Jan 1 2019, (Accepted/In press) In : Nature genetics.

Research output: Contribution to journalComment/debate

Energy Intake
Energy Metabolism
Body Mass Index
Obesity
Proteins
6 Citations (Scopus)

PUMILIO hyperactivity drives premature aging of Norad-deficient mice

Kopp, F., Elguindy, M. M., Yalvac, M. E., Zhang, H., Chen, B., Gillett, F. A., Lee, S., Sivakumar, S., Yu, H., Xie, Y., Mishra, P., Sahenk, Z. & Mendell, J. T., Feb 8 2019, In : eLife. 8

Research output: Contribution to journalArticle

Open Access
Long Noncoding RNA
Premature Aging
Aging of materials
Physiology
Phenotype
1 Citation (Scopus)

Rcrnorm: An integrated system of random-coefficient hierarchical regression models for normalizing nanostring ncounter data

Jia, G., Wang, X., Li, Q., Lu, W. E. I., Tang, X., Wistuba, I. & Xie, Y., Sep 2019, In : Annals of Applied Statistics. 13, 3, p. 1617-1647 31 p.

Research output: Contribution to journalArticle

Open Access
Random Coefficients
Hierarchical Model
Integrated System
Formaldehyde
Paraffins
1 Citation (Scopus)

Scina: Semi-supervised analysis of single cells in silico

Zhang, Z., Luo, D., Zhong, X., Choi, J. H., Ma, Y., Wang, S., Mahrt, E., Guo, W., Stawiski, E. W., Modrusan, Z., Seshagiri, S., Kapur, P., Hon, G. C., Brugarolas, J. & Wang, T., Jul 1 2019, In : Genes. 10, 7, 531.

Research output: Contribution to journalArticle

Open Access
Single-Cell Analysis
RNA Sequence Analysis
Computer Simulation
Neoplasms
Oligodendroglia
5 Citations (Scopus)

Somatic Mutations Increase Hepatic Clonal Fitness and Regeneration in Chronic Liver Disease

Zhu, M., Lu, T., Jia, Y., Luo, X., Gopal, P., Li, L., Odewole, M., Renteria, V., Singal, A., Jang, Y., Ge, K., Wang, S. C., Sorouri, M., Parekh, J., MacConmara, M. P., Yopp, A. C., Wang, T. & Zhu, H., Apr 18 2019, In : Cell. 177, 3, p. 608-621.e12

Research output: Contribution to journalArticle

Liver
Liver Diseases
Regeneration
Chronic Disease
Genes
7 Citations (Scopus)

SR-B1 drives endothelial cell LDL transcytosis via DOCK4 to promote atherosclerosis

Huang, L., Chambliss, K. L., Gao, X., Yuhanna, I. S., Behling-Kelly, E., Bergaya, S., Ahmed, M., Michaely, P., Luby-Phelps, K., Darehshouri, A., Xu, L., Fisher, E. A., Ge, W. P., Mineo, C. & Shaul, P. W., Jan 1 2019, In : Nature.

Research output: Contribution to journalLetter

CD36 Antigens
Transcytosis
Cytokinesis
LDL Lipoproteins
Atherosclerosis
1 Citation (Scopus)

Systematic analysis of gene expression in lung adenocarcinoma and squamous cell carcinoma with a case study of FAM83A and FAM83B

Cai, L., Luo, D., Yao, B., Yang, D. M., Lin, S., Girard, L., Deberardinis, R. J., Minna, J. D., Xie, Y. & Xiao, G., Jun 1 2019, In : Cancers. 11, 6, 886.

Research output: Contribution to journalArticle

Open Access
Squamous Cell Carcinoma
Lung Neoplasms
Gene Expression
Databases
Neoplasm Genes
3 Citations (Scopus)

Transforming activity of an oncoprotein-encoding circular RNA from human papillomavirus

Zhao, J., Lee, E. E., Kim, J., Yang, R., Chamseddin, B., Ni, C., Gusho, E., Xie, Y., Chiang, C. M., Buszczak, M., Zhan, X., Laimins, L. & Wang, R. C., Dec 1 2019, In : Nature communications. 10, 1, 2300.

Research output: Contribution to journalArticle

Open Access
Oncogene Proteins
coding
cancer
viruses
oncogenes
1 Citation (Scopus)

Twist2 amplification in rhabdomyosarcoma represses myogenesis and promotes oncogenesis by redirecting MyoD DNA binding

Li, S., Chen, K., Zhang, Y., Barnes, S. D., Jaichander, P., Zheng, Y., Hassan, M., Malladi, V. S., Skapek, S. X., Xu, L., Bassel-Duby, R., Olson, E. N. & Liu, N., Jun 1 2019, In : Genes & development. 33, 11-12, p. 626-640 15 p.

Research output: Contribution to journalArticle

Open Access
Rhabdomyosarcoma
Muscle Development
Carcinogenesis
DNA
Chromatin

Type and case volume of health care facility influences survival and surgery selection in cases with early-stage non–small cell lung cancer

Wang, S., Lai, S., von Itzstein, M. S., Yang, L., Yang, D. M., Zhan, X., Xiao, G., Halm, E. A., Gerber, D. E. & Xie, Y., Jan 1 2019, (Accepted/In press) In : Cancer.

Research output: Contribution to journalArticle

Health Facilities
Non-Small Cell Lung Carcinoma
Delivery of Health Care
Neoplasms
Logistic Models
2 Citations (Scopus)

Unique mutation patterns in anaplastic thyroid cancer identified by comprehensive genomic profiling

Khan, S., Ci, B., Xie, Y., Gerber, D. E., Beg, M. S., Sherman, S. I., Cabanillas, M. E., Busaidy, N. L., Burtness, B. A., Heilmann, A. M., Bailey, M., Ross, J. S., Sher, D. J. & Ali, S. M., Jan 1 2019, In : Head and Neck.

Research output: Contribution to journalArticle

Mutation
Neoplasm Genes
Thyroid Neoplasms
Anaplastic Thyroid Carcinoma
Therapeutics

Usefulness of Blood Pressure Variability Indices Derived From 24-Hour Ambulatory Blood Pressure Monitoring in Detecting Autonomic Failure

Lodhi, H. A., Peri-Okonny, P. A., Schesing, K., Phelps, K., Ngo, C., Evans, H., Arbique, D., Price, A. L., Vernino, S., Phillips, L., Mitchell, J. H., Smith, S. A., Yano, Y., Das, S. R., Wang, T. & Vongpatanasin, W., Apr 2 2019, In : Journal of the American Heart Association. 8, 7, p. e010161

Research output: Contribution to journalArticle

Open Access
Ambulatory Blood Pressure Monitoring
Blood Pressure
Sensitivity and Specificity

Validation of the 12-gene predictive signature for adjuvant chemotherapy response in lung cancer

Xie, Y., Lu, W., Wang, S., Tang, X., Tang, H., Zhou, Y., Moran, C., Behrens, C., Roth, J. A., Zhou, Q., Johnson, D. H., Swisher, S. G., Heymach, J. V., Papadimitrakopoulou, V. A., Xiao, G., Minna, J. D. & Wistuba, I. I., Jan 1 2019, In : Clinical Cancer Research. 25, 1, p. 150-157 8 p.

Research output: Contribution to journalArticle

Adjuvant Chemotherapy
Lung Neoplasms
Genes
Non-Small Cell Lung Carcinoma
Paraffin
2018
1 Citation (Scopus)

A Bayesian hierarchical model for analyzing methylated RNA immunoprecipitation sequencing data

Zhang, M., Li, Q. & Xie, Y., Sep 1 2018, In : Quantitative Biology. 6, 3, p. 275-286 12 p.

Research output: Contribution to journalArticle

RNA Sequence Analysis
Bayesian Hierarchical Model
RNA
Immunoprecipitation
Sequencing
9 Citations (Scopus)

An empirical approach leveraging tumorgrafts to dissect the tumor microenvironment in renal cell carcinoma identifies missing link to prognostic inflammatory factors

Wang, T., Lu, R., Kapur, P., Jaiswal, B. S., Hannan, R., Zhang, Z., Pedrosa, I., Luke, J. J., Zhang, H., Goldstein, L. D., Yousuf, Q., Gu, Y. F., McKenzie, T., Joyce, A., Kim, M. S., Wang, X., Luo, D., Onabolu, O., Stevens, C., Xie, Z. & 11 others, Chen, M., Filatenkov, A., Torrealba, J., Luo, X., Guo, W., He, J., Stawiski, E., Modrusan, Z., Durinck, S., Seshagiri, S. & Brugarolas, J., Sep 1 2018, In : Cancer Discovery. 8, 9, p. 1142-1155 14 p.

Research output: Contribution to journalArticle

Tumor Microenvironment
Renal Cell Carcinoma
Neoplasms
Inflammation
RNA Sequence Analysis
1 Citation (Scopus)

A two-stage approach of gene network analysis for high-dimensional heterogeneous data

Lee, S., Liang, F., Cai, L. & Xiao, G., Apr 1 2018, In : Biostatistics. 19, 2, p. 216-232 17 p.

Research output: Contribution to journalArticle

Gene Networks
Network Analysis
High-dimensional
Gaussian Model
Graphical Models
22 Citations (Scopus)

Beclin-1-Dependent Autophagy Protects the Heart During Sepsis

Sun, Y., Yao, X., Zhang, Q. J., Zhu, M., Liu, Z-P., Ci, B., Xie, Y., Carlson, D. L., Rothermel, B. A., Sun, Y., Levine, B., Hill, J. A., Wolf, S. E., Minei, J. P. & Zang, Q., Nov 13 2018, In : Circulation. 138, 20, p. 2247-2262 16 p.

Research output: Contribution to journalArticle

Autophagy
Sepsis
Lipopolysaccharides
Sirolimus
Mitochondrial Degradation

Characteristics of patients using patient portals in oncology

Pho, K., Lu, R., Gates, S., Xie, Y., Craddock Lee, S. J. & Gerber, D. E., Mar 1 2018, In : JAMA oncology. 4, 3, p. 416-418 3 p.

Research output: Contribution to journalLetter

Patient Portals
14 Citations (Scopus)

Chemistry-First Approach for Nomination of Personalized Treatment in Lung Cancer

McMillan, E. A., Ryu, M. J., Diep, C. H., Mendiratta, S., Clemenceau, J. R., Vaden, R. M., Kim, J. H., Motoyaji, T., Covington, K. R., Peyton, M., Huffman, K., Wu, X., Girard, L., Sung, Y., Chen, P. H., Mallipeddi, P. L., Lee, J. Y., Hanson, J., Voruganti, S., Yu, Y. & 20 others, Park, S., Sudderth, J., DeSevo, C., Muzny, D. M., Doddapaneni, H. V., Gazdar, A., Gibbs, R. A., Hwang, T. H., Heymach, J. V., Wistuba, I., Coombes, K. R., Williams, N. S., Wheeler, D. A., MacMillan, J. B., Deberardinis, R. J., Roth, M. G., Posner, B. A., Minna, J. D., Kim, H. S. & White, M. A., May 3 2018, In : Cell. 173, 4, p. 864-878.e29

Research output: Contribution to journalArticle

Lung Neoplasms
Neoplasms
Oncology
Biosynthesis
Small Molecule Libraries
5 Citations (Scopus)

Comprehensive analysis of lung cancer pathology images to discover tumor shape and boundary features that predict survival outcome

Wang, S., Chen, A., Yang, L., Cai, L., Xie, Y., Fujimoto, J., Gazdar, A. & Xiao, G., Dec 1 2018, In : Scientific Reports. 8, 1, 10393.

Research output: Contribution to journalArticle

Lung Neoplasms
Pathology
Survival
Neoplasms
Smoking

Deep integrative analysis for survival prediction

Huang, C., Zhang, A. & Xiao, G., Jan 1 2018, PACIFIC SYMPOSIUM ON BIOCOMPUTING 2018. 212669 ed. World Scientific Publishing Co. Pte Ltd, p. 343-352 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tumors
Brain
Deep learning
3 Citations (Scopus)

Development and Validation of a Nomogram Prognostic Model for SCLC Patients

Wang, S., Yang, L., Ci, B., Maclean, M., Gerber, D. E., Xiao, G. & Xie, Y., Sep 1 2018, In : Journal of Thoracic Oncology. 13, 9, p. 1338-1348 11 p.

Research output: Contribution to journalArticle

Nomograms
Neoplasm Staging
Area Under Curve
Neoplasms
ROC Curve

Fused lasso regression for identifying differential correlations in brain connectome graphs

Yu, D., Lee, S. H., Lim, J., Xiao, G., Craddock, R. C. & Biswal, B. B., Jan 1 2018, (Accepted/In press) In : Statistical Analysis and Data Mining.

Research output: Contribution to journalArticle

Lasso
Penalized Regression
Partial Correlation
Brain
Regression
5 Citations (Scopus)

Genetic and epigenetic features of rapidly progressing IDH-mutant astrocytomas

Richardson, T. E., Sathe, A. A., Kanchwala, M., Jia, G., Habib, A. A., Xiao, G., Snuderl, M., Xing, C. & Hatanpaa, K. J., Jan 1 2018, In : Journal of Neuropathology and Experimental Neurology. 77, 7, p. 542-548 7 p.

Research output: Contribution to journalArticle

Astrocytoma
Epigenomics
Chromosomal Instability
Mutation
Atlases
6 Citations (Scopus)

Immune dysregulation in cancer patients developing immune-related adverse events

Khan, S., Khan, S., Luo, X., Fattah, F. J., Saltarski, J., Gloria-McCutchen, Y., Lu, R., Xie, Y., Li, Q., Wakeland, E. K. & Gerber, D. E., Jan 1 2018, (Accepted/In press) In : British Journal of Cancer.

Research output: Contribution to journalArticle

Neoplasms
Cytokines
Therapeutics
Interleukin-10
Serum