Research Output

2020

An integrated electrical enzyme-linked immunosorbent assay (E2LISA) for point-of-care diagnosis of tuberculosis using glycan biomarkers

Sarkar, A., Lu, L. L., Han, J. & Alter, G., Jan 1 2020, 21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017. Chemical and Biological Microsystems Society, p. 5-6 2 p. (21st International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Falling Through the Cracks: Risk Factors for Becoming Lost to HIV Care After Incarceration in a Southern Jail

Tiruneh, Y. M., Li, X., Bovell-Ammon, B., Iroh, P., Flanigan, T. P., Montague, B. T., Rich, J. D. & Nijhawan, A. E., Jan 1 2020, (Accepted/In press) In : AIDS and Behavior.

Research output: Contribution to journalArticle

HIV/HCV therapy with ledipasvir/sofosbuvir after randomized switch to emtricitabinetenofovir alafenamide-based single-tablet regimens

Huhn, G. D., Ramgopal, M., Jain, M. K., Hinestrosa, F., Asmuth, D. M., Slim, J., Goldstein, D., Applin, S., Ryu, J. H., Jiang, S., Cox, S., Das, M., Nguyen-Cleary, T., Piontkowsky, D., Guyer, B., Rossaro, L. & Haubrich, R. H., Jan 1 2020, In : PloS one. 15, 1, e0224875.

Research output: Contribution to journalArticle

Open Access

Homeostatic regulation of STING protein at the resting state by stabilizer TOLLIP

Pokatayev, V., Yang, K., Tu, X., Dobbs, N., Wu, J., Kalb, R. G. & Yan, N., Feb 1 2020, In : Nature immunology. 21, 2, p. 158-167 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

ImPlementation REsearCh to DEvelop Interventions for People Living with HIV (the PRECluDE consortium): Combatting chronic disease comorbidities in HIV populations through implementation research

Implementation Research to Develop Interventions for People Living with HIV (PRECluDE) Consortium, Mar 1 2020, In : Progress in Cardiovascular Diseases. 63, 2, p. 79-91 13 p.

Research output: Contribution to journalReview article

Managing emerging infectious diseases: Should travel be the fifth vital sign?

Perl, T. M. & Price, C. S., Apr 21 2020, In : Annals of internal medicine. 172, 8, p. 560-561 2 p.

Research output: Contribution to journalComment/debate

Open Access

Minimal Cerebrospinal Fluid Concentration of Miltefosine despite Therapeutic Plasma Levels during the Treatment of Amebic Encephalitis

Monogue, M. L., Watson, D., Alexander, J. S., Cavuoti, D., Doyle, L. M., Wang, M. Z. & Prokesch, B. C., Jan 1 2020, In : Antimicrobial agents and chemotherapy. 64, 1, e01127-19.

Research output: Contribution to journalArticle

N95 Respirators vs Medical Masks in Outpatient Settings-Reply

Radonovich, L. J., Simberkoff, M. S. & Perl, T. M., Feb 25 2020, In : JAMA - Journal of the American Medical Association. 323, 8, p. 789-790 2 p.

Research output: Contribution to journalLetter

Necrotizing Soft Tissue Infections: A Focused Review of Pathophysiology, Diagnosis, Operative Management, Antimicrobial Therapy, and Pediatrics

Tessier, J. M., Sanders, J., Sartelli, M., Ulrych, J., De Simone, B., Grabowski, J., Buckman, S. & Duane, T. M., Mar 2020, In : Surgical Infections. 21, 2, p. 81-93 13 p.

Research output: Contribution to journalArticle

Patient and provider-level barriers to hepatitis C screening and linkage to care: A mixed-methods evaluation

Higashi, R. T., Jain, M. K., Quirk, L., Rich, N. E., Waljee, A. K., Turner, B. J., Lee, S. C. & Singal, A. G., Jan 1 2020, (Accepted/In press) In : Journal of Viral Hepatitis.

Research output: Contribution to journalArticle

Predictors for Poor Linkage to Care among Hospitalized Persons Living with HIV and Co-Occurring Substance Use Disorder

Summers, N. A., Colasanti, J. A., Feaster, D. J., Armstrong, W. S., Rodriguez, A., Jain, M. K., Jacobs, P., Metsch, L. R. & Del Rio, C., May 2020, In : AIDS research and human retroviruses. 36, 5, p. 406-414 9 p.

Research output: Contribution to journalArticle

Role of inflammatory biomarkers in the prevalence and incidence of hypertension among HIV-positive participants in the START trial

Ghazi, L., Baker, J. V., Sharma, S., Jain, M. K., Palfreeman, A., Necsoi, C., Murray, D. D., Neaton, J. D. & Drawz, P. E., Jan 1 2020, In : American Journal of Hypertension. 33, 1, p. 43-52 10 p.

Research output: Contribution to journalArticle

VaMPR: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning

Kim, J., Greenberg, D. E., Pifer, R., Jiang, S., Xiao, G., Shelburne, S. A., Koh, A., Xie, Y. & Zhan, X., Jan 1 2020, In : PLoS Computational Biology. 16, 1, e1007511.

Research output: Contribution to journalArticle

Open Access

Whole-genome sequencing of Staphylococcus epidermidis bloodstream isolates from a prospective clinical trial reveals that complicated bacteraemia is caused by a limited number of closely related sequence types

Shelburne, S. A., Dib, R. W., Endres, B. T., Reitzel, R., Li, X., Kalia, A., Sahasrabhojane, P., Chaftari, A. M., Hachem, R., Vargas-Cruz, N. S., Jiang, Y., Garey, K., Fowler, V. G., Holland, T. L., Gu, J., Miller, W., Sakurai, A., Arias, C. A., Aitken, S. L., Greenberg, D. E. & 3 others, Kim, J., Flores, A. R. & Raad, I., May 2020, In : Clinical Microbiology and Infection. 26, 5, p. 646.e1-646.e8

Research output: Contribution to journalArticle

2019

2018 Infectious diseases society of America clinical practice guideline for the management of outpatient parenteral antimicrobial therapy

Norris, A. H., Shrestha, N. K., Allison, G. M., Keller, S. C., Bhavan, K. P., Zurlo, J. J., Hersh, A. L., Gorski, L. A., Bosso, J. A., Rathore, M. H., Arrieta, A., Petrak, R. M., Shah, A., Brown, R. B., Knight, S. L. & Umscheid, C. A., Jan 1 2019, In : Clinical Infectious Diseases. 68, 1, p. E1-E35

Research output: Contribution to journalReview article

Open Access
27 Scopus citations

A bioactive mammalian disaccharide associated with autoimmunity activates STING-TBK1-dependent immune response

Fermaintt, C. S., Sano, K., Liu, Z., Ishii, N., Seino, J., Dobbs, N., Suzuki, T., Fu, Y. X., Lehrman, M. A., Matsuo, I. & Yan, N., Dec 1 2019, In : Nature communications. 10, 1, 2377.

Research output: Contribution to journalArticle

Open Access

AcrAB-TolC Inhibition by Peptide-Conjugated Phosphorodiamidate Morpholino Oligomers Restores Antibiotic Activity in Vitro and in Vivo

Sturge, C. R., Felder-Scott, C. F., Pifer, R., Pybus, C., Jain, R., Geller, B. L. & Greenberg, D. E., Jan 1 2019, In : ACS Infectious Diseases.

Research output: Contribution to journalArticle

1 Scopus citations

An Inflammatory Story: Antibodies in Tuberculosis Comorbidities

McLean, M. R., Lu, L. L., Kent, S. J. & Chung, A. W., Dec 9 2019, In : Frontiers in immunology. 10, 2846.

Research output: Contribution to journalReview article

Open Access
Open Access
11 Scopus citations

Anti-influenza immune plasma for the treatment of patients with severe influenza A: a randomised, double-blind, phase 3 trial

IRC005 Study Team, Nov 2019, In : The Lancet Respiratory Medicine. 7, 11, p. 941-950 10 p.

Research output: Contribution to journalArticle

8 Scopus citations

Are We Misdiagnosing Diabetic Foot Osteomyelitis? Is the Gold Standard Gold?

Lavery, L. A., Crisologo, P. A., La Fontaine, J., Bhavan, K., Oz, O. K. & Davis, K. E., Jul 1 2019, In : Journal of Foot and Ankle Surgery. 58, 4, p. 713-716 4 p.

Research output: Contribution to journalArticle

1 Scopus citations

Association between Federally Qualified Health Center usage and emergency department utilization among California’s HIV-infected Medicaid beneficiaries, 2009

Chow, J. Y., Comulada, W. S., Gildner, J. L., Desmond, K. A. & Leibowitz, A. A., Apr 3 2019, In : AIDS Care - Psychological and Socio-Medical Aspects of AIDS/HIV. 31, 4, p. 519-527 9 p.

Research output: Contribution to journalArticle

Association of syndemic unhealthy alcohol use, cigarette use, and depression with all-cause mortality among adults living with and without HIV infection: Veterans aging cohort study

Chichetto, N. E., Kundu, S., Freiberg, M. S., Butt, A. A., Crystal, S., So-Armah, K. A., Cook, R. L., Scott Braithwaite, R., Fiellin, D. A., Khan, M. R., Bryant, K. J., Gaither, J. R., Barve, S. S., Crothers, K., Bedimo, R. J., Warner, A. L. & Tindle, H. A., Jun 3 2019, In : Open Forum Infectious Diseases. 6, 6, ofz188.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Clinical and Sociobehavioral Prediction Model of 30-Day Hospital Readmissions Among People With HIV and Substance Use Disorder: Beyond Electronic Health Record Data

Nijhawan, A. E., Metsch, L. R., Zhang, S., Feaster, D. J., Gooden, L., Jain, M., Walker, N. R., Huffaker, S., Mugavero, M. J., Jacobs, P., Armstrong, W. S., Daar, E. S., Sullivan, M., Del Rio, C. & Halm, E. A., Mar 1 2019, In : Journal of acquired immune deficiency syndromes (1999). 80, 3, p. 330-341 12 p.

Research output: Contribution to journalArticle

Combating resistance while maintaining innovation: The future of antimicrobial stewardship

Vickers, R. J., Bassetti, M., Clancy, C. J., Garey, K. W., Greenberg, D. E., Nguyen, M. H., Roblin, D., Tillotson, G. S. & Wilcox, M. H., Jan 1 2019, In : Future Microbiology. 14, 15, p. 1331-1341 11 p.

Research output: Contribution to journalReview article

1 Scopus citations

Combined estimation of disease progression and retention on antiretroviral therapy among treated individuals with HIV in the USA: a modelling study

Wang, L., Krebs, E., Min, J. E., Mathews, W. C., Nijhawan, A., Somboonwit, C., Aberg, J. A., Moore, R. D., Gebo, K. A., Nosyk, B., Edelstein, H., Rutstein, R., Baranoski, A., Allen, S., Boswell, S., Mayer, K., Gebo, K. A., Moore, R. D., Agwu, A., Beil, R. & 15 others, Felsen, U., Aberg, J. A., Urbina, A., Korthuis, P. T., Akbar, M., Gaur, A., Valenti, W., Mathews, W. C., Hellinger, F., Fleishman, J., Mills, R., Keruly, J., Voss, C., Collins, C. & Diaz-Reyes, R., Aug 2019, In : The Lancet HIV. 6, 8, p. e531-e539

Research output: Contribution to journalArticle

3 Scopus citations

Dallas MegaShelter Medical Operations Response to Hurricane Harvey

Liu, E. L., Morshedi, B., Miller, B. L., Miller, R., Isaacs, S. M., Fowler, R. L., Chung, W., Blum, R., Ward, B., Carlo, J., Hennes, H., Webster, F., Perl, T., Noah, C., Monaghan, R., Tran, A. H., Benitez, F., Graves, J., Kibbey, C., Klein, K. R. & 1 others, Swienton, R. E., Feb 1 2019, In : Disaster Medicine and Public Health Preparedness. 13, 1, p. 90-93 4 p.

Research output: Contribution to journalArticle

1 Scopus citations

Depression and all-cause mortality risk in HIV-infected and HIV-uninfected US veterans: a cohort study

So-Armah, K., Gupta, S. K., Kundu, S., Stewart, J. C., Goulet, J. L., Butt, A. A., Sico, J. J., Marconi, V. C., Crystal, S., Rodriguez-Barradas, M. C., Budoff, M., Gibert, C. L., Chang, C. C. H., Bedimo, R. & Freiberg, M. S., May 2019, In : HIV Medicine. 20, 5, p. 317-329 13 p.

Research output: Contribution to journalArticle

1 Scopus citations
1 Scopus citations

Discontinuity in medicaid coverage among young adults with HIV

Rusley, J. C., Monroe, A., Matson, P., Gebo, K. A., Nonyane, B. A. S., Minkovitz, C. S., Agwu, A., Emerson, M., Moore, R., Rutstein, R., Aberg, J., Nijhawan, A. E., Boswell, S. & Sanders, R., Mar 1 2019, In : AIDS Patient Care and STDs. 33, 3, p. 89-92 4 p.

Research output: Contribution to journalLetter

Does Use of Electronic Alerts for Systemic Inflammatory Response Syndrome (SIRS)to Identify Patients With Sepsis Improve Mortality?

Seetharaman, S., Wilson, C., Landrum, M., Qasba, S., Katz, M., Ladikos, N., Harris, J. E., Galiatsatos, P., Yousem, D. M., Knight, A. M., Pearse, D. B., Blanding, R., Bennett, R., Galai, N., Perl, T. & Sood, G., Jan 1 2019, In : American Journal of Medicine.

Research output: Contribution to journalArticle

2 Scopus citations

Efficacy and safety of a novel antimicrobial preoperative skin preparation

Crnich, C. J., Pop-Vicas, A. E., Hedberg, T. G. & Perl, T., Jan 1 2019, (Accepted/In press) In : Infection Control and Hospital Epidemiology.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Emergency department testing patterns for sexually transmitted diseases in North Texas

Barnes, A., Jetelina, K. K., Betts, A. C., Mendoza, T., Sreeramoju, P. & Tiro, J. A., Jul 1 2019, In : Sexually Transmitted Diseases. 46, 7, p. 434-439 6 p.

Research output: Contribution to journalArticle

Erratum: An outbreak of brucellosis: An adult and pediatric case series (Open Forum Infectious Diseases (2019) 6: 10 (ofz384) DOI: 10.1093/ofid/ofz384)

Hassouneh, L., Quadri, S., Reto, P. P., Chaisavaneeyakorn, S., Cutrell, J. B., Wetzel, D. M. & Nijhawan, A. E., Dec 1 2019, In : Open Forum Infectious Diseases. 6, 12

Research output: Contribution to journalComment/debate

Open Access

Evaluating Noninvasive Markers to Identify Advanced Fibrosis by Liver Biopsy in HBV/HIV Co-infected Adults

the HIV-HBV Cohort Study of the Hepatitis B Research Network, Jan 1 2019, (Accepted/In press) In : Hepatology.

Research output: Contribution to journalArticle

4 Scopus citations

Evaluation of a Multifaceted Intervention to Reduce Health Disparities in Hepatitis C Screening: A Pre-Post Analysis

Jain, M. K., Rich, N. E., Ahn, C., Turner, B. J., Sanders, J. M., Adamson, B., Quirk, L., Perryman, P., Santini, N. O. & Singal, A. G., Jan 1 2019, In : Hepatology.

Research output: Contribution to journalArticle

3 Scopus citations

Factors associated with postpartum loss to follow-up and detectable viremia after delivery among pregnant women living with HIV

Adhikari, E. H., Yule, C. S., Roberts, S. W., Rogers, V. L., Sheffield, J. S., Kelly, M. A., McIntire, D. D. & Barnes, A., Jan 1 2019, In : AIDS Patient Care and STDs. 33, 1, p. 14-20 7 p.

Research output: Contribution to journalArticle

Has Access to Hepatitis C Virus Therapy Changed for Patients With Mental Health or Substance Use Disorders in the Direct-Acting-Antiviral Period?

Jain, M., Thamer, M., Therapondos, G., Shiffman, M. L., Kshirsagar, O., Clark, C. & Wong, R. J., Jan 2019, In : Hepatology. 69, 1, p. 51-63 13 p.

Research output: Contribution to journalArticle

7 Scopus citations

Hepatitis C Virus Infection in the Dallas County Jail: Implications for Screening, Prevention, and Linkage to Care

Abe, C. M., Aguwa, M., Zhao, M., Sullivan, J., Porsa, E. & Nijhawan, A. E., Jan 1 2019, (Accepted/In press) In : Public Health Reports.

Research output: Contribution to journalArticle

IFN-γ-independent immune markers of Mycobacterium tuberculosis exposure

Lu, L. L., Smith, M. T., Yu, K. K. Q., Luedemann, C., Suscovich, T. J., Grace, P. S., Cain, A., Yu, W. H., McKitrick, T. R., Lauffenburger, D., Cummings, R. D., Mayanja-Kizza, H., Hawn, T. R., Boom, W. H., Stein, C. M., Fortune, S. M., Seshadri, C. & Alter, G., Jun 1 2019, In : Nature medicine. 25, 6, p. 977-987 11 p.

Research output: Contribution to journalArticle

23 Scopus citations

Impact of availability of telehealth programs on documented HIV viral suppression: A cluster-randomized program evaluation in the veterans health administration

Ohl, M. E., Richardson, K., Rodriguez-Barradas, M. C., Bedimo, R., Marconi, V., Morano, J. P., Jones, M. P. & Vaughan-Sarrazin, M., Jun 3 2019, In : Open Forum Infectious Diseases. 6, 6, ofz206.

Research output: Contribution to journalArticle

Open Access

Influence of HIV infection on the natural history of hepatocellular carcinoma: Results from a global multicohort study

and the Liver Cancer in HIV and ITA.LI.CA Study Groups, Feb 1 2019, In : Journal of Clinical Oncology. 37, 4, p. 296-304 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

Insomnia as an Independent Predictor of Incident Cardiovascular Disease in HIV: Data from the Veterans Aging Cohort Study

Polanka, B. M., Kundu, S., So-Armah, K. A., Freiberg, M. S., Gupta, S. K., Bedimo, R. J., Budoff, M. J., Butt, A. A., Chang, C. C. H., Gottlieb, S. S., Marconi, V. C., Womack, J. A. & Stewart, J. C., May 1 2019, In : Journal of Acquired Immune Deficiency Syndromes. 81, 1, p. 110-117 8 p.

Research output: Contribution to journalArticle

Integrated stepped alcohol treatment for patients with HIV and alcohol use disorder: a randomised controlled trial

Edelman, E. J., Maisto, S. A., Hansen, N. B., Cutter, C. J., Dziura, J., Deng, Y., Fiellin, L. E., O'Connor, P. G., Bedimo, R. J., Gibert, C. L., Marconi, V. C., Rimland, D., Rodriguez-Barradas, M. C., Simberkoff, M. S., Tate, J. P., Justice, A. C., Bryant, K. J. & Fiellin, D. A., Aug 1 2019, In : The Lancet HIV. 6, 8, p. e509-e517

Research output: Contribution to journalArticle

6 Scopus citations

Integrated stepped alcohol treatment for patients with HIV and liver disease: A randomized trial

Edelman, E. J., Maisto, S. A., Hansen, N. B., Cutter, C. J., Dziura, J., Deng, Y., Fiellin, L. E., O'Connor, P. G., Bedimo, R. J., Gibert, C. L., Marconi, V. C., Rimland, D., Rodriguez-Barradas, M. C., Simberkoff, M. S., Tate, J. P., Justice, A. C., Bryant, K. J. & Fiellin, D. A., Nov 1 2019, In : Journal of Substance Abuse Treatment. 106, p. 97-106 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

Interpreting CD4 Counts in a Patient with HIV

Nath, S., Nath, S. & Lazarte, S., Jan 1 2019, (Accepted/In press) In : JAMA Internal Medicine.

Research output: Contribution to journalComment/debate

4 Scopus citations