Research Output 1968 2019

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2019

Ex Vivo Transposon-Mediated Genetic Screens for Cancer Gene Discovery

O'Donnell-Mendell, K. A., Guo, Y., Suresh, S., Updegraff, B. L. & Zhou, X., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 145-157 13 p. (Methods in Molecular Biology; vol. 1907).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neoplasm Genes
Genetic Association Studies
Mutagenesis
Intercellular Signaling Peptides and Proteins
Phenotype

Methods for renal lineage tracing: In vivo and beyond

Drake, K. A., Fessler, A. R. & Carroll, T. J., Jan 1 2019, Methods in Cell Biology. Academic Press Inc., (Methods in Cell Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Kidney Diseases
Organogenesis
Kidney
Spatio-Temporal Analysis
Developmental Biology
2018

Developmental molecular biology of the pancreas

Murtaugh, L. C., Cleaver, O. & MacDonald, R. J., Apr 11 2018, Pancreatic Cancer. Springer New York, p. 89-145 57 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Developmental Biology
Molecular Biology
Pancreas
Intrinsic Factor
Organogenesis

Genome-wide identification of transcription factor-binding sites in quiescent adult neural stem cells

Mukherjee, S. & Hsieh, J., 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1686. p. 265-286 22 p. (Methods in Molecular Biology; vol. 1686).

Research output: Chapter in Book/Report/Conference proceedingChapter

Histone Code
Adult Stem Cells
Neural Stem Cells
Transcription Factors
Binding Sites

High-throughput characterization of primary microRNA transcripts

Chang, T. C. & Mendell, J. T., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 1-9 9 p. (Methods in Molecular Biology; vol. 1823).

Research output: Chapter in Book/Report/Conference proceedingChapter

MicroRNAs
RNA Sequence Analysis
Untranslated RNA
Polyadenylation
Publications
2017

Isolation and culture of oligodendrocyte precursor cells from prenatal and postnatal rodent brain

He, D., Meyer, B. & Richard Lu, Q., 2017, Neuromethods. Humana Press Inc., Vol. 126. p. 95-109 15 p. (Neuromethods; vol. 126).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oligodendroglia
Rodentia
Brain
Repair
Neurology
2 Citations (Scopus)

Live-cell imaging of the adult drosophila ovary using confocal microscopy

Shalaby, N. A. & Buszczak, M., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1463. p. 85-91 7 p. (Methods in Molecular Biology; vol. 1463).

Research output: Chapter in Book/Report/Conference proceedingChapter

Confocal Microscopy
Drosophila
Ovary
Stem Cells
Molecular Dynamics Simulation

microRNAs in Oligodendrocyte Myelination and Repair in the Central Nervous System

Zhao, X., Wang, H. & Lu, Q. R., Jan 1 2017, Essentials of Noncoding RNA in Neuroscience: Ontogenetics, Plasticity of the Vertebrate Brain. Elsevier Inc., p. 197-210 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Oligodendroglia
MicroRNAs
Central Nervous System
Demyelinating Diseases
Myelin Sheath
12 Citations (Scopus)

Mitochondria in structural and functional cardiac remodeling

Torrealba, N., Aranguiz, P., Alonso, C., Rothermel, B. A. & Lavandero, S., May 1 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 982. p. 277-306 30 p. (Advances in Experimental Medicine and Biology; vol. 982).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mitochondria
Cell death
Cell Death
Adenosine Triphosphate
Waste Products
2016

Biochemical analysis of Tankyrase activity in zebrafish in vitro and in vivo

Moon, J. & Amatruda, J. F., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1481. p. 95-100 6 p. (Methods in Molecular Biology; vol. 1481).

Research output: Chapter in Book/Report/Conference proceedingChapter

Tankyrases
Catenins
Zebrafish
Wnt Signaling Pathway
Enzyme Inhibitors
2 Citations (Scopus)

Methods to purify and assay secretory pathway kinases

Tagliabracci, V. S., Wen, J. & Xiao, J., Sep 1 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1496. p. 197-215 19 p. (Methods in Molecular Biology; vol. 1496).

Research output: Chapter in Book/Report/Conference proceedingChapter

Secretory Pathway
Phosphotransferases
Proteoglycans
Biological Phenomena
Protein Kinases

The role of epigenetics in the pathophysiology of epilepsy

Nam, S. M. & Cho, K. O., Nov 29 2016, Neuropsychiatric Disorders and Epigenetics. Elsevier Inc., p. 233-260 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Epigenomics
Epilepsy
Brain
Seizures
Untranslated RNA
1 Citation (Scopus)

Zebrafish as a model for the study of solid malignancies

Kendall, G. C. & Amatruda, J. F., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1451. p. 121-142 22 p. (Methods in Molecular Biology; vol. 1451).

Research output: Chapter in Book/Report/Conference proceedingChapter

Zebrafish
Oncogenes
Neoplasms
Carcinogenesis
Gene Transfer Techniques
2 Citations (Scopus)

Zebrafish germ cell tumors

Sanchez, A. & Amatruda, J. F., 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 916. p. 479-494 16 p. (Advances in Experimental Medicine and Biology; vol. 916).

Research output: Chapter in Book/Report/Conference proceedingChapter

Germ Cell and Embryonal Neoplasms
Zebrafish
Tumors
Cells
Neoplasms
2015

Developmental Roles of the Stroma

Carroll, T. & Kwartler, C. S., Jan 1 2015, Kidney Development, Disease, Repair and Regeneration. Elsevier Science Ltd., p. 133-145 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Kidney
Nephrons
Stromal Cells
Stem Cells
Pericytes
1 Citation (Scopus)

"Genuine" Casein Kinase (Fam20C): The Mother of the Phosphosecretome

Cozza, G., Tagliabracci, V. S., Dixon, J. E. & Pinna, L. A., Oct 1 2015, Kinomics: Approaches and Applications. wiley, p. 47-62 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Casein Kinases
Caseins
Casein Kinase I
Casein Kinase II
Peptides
14 Citations (Scopus)

The Maternal-to-Zygotic Transition in C. elegans

Robertson, S. & Lin, R., 2015, Current Topics in Developmental Biology. Academic Press Inc., Vol. 113. p. 1-42 42 p. (Current Topics in Developmental Biology; vol. 113).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mothers
RNA-Binding Proteins
Caenorhabditis elegans
Blastomeres
Gastrulation

Transplantation of Olfactory Ensheathing Cells for Neural Repair

Su, Z. & He, C., Feb 6 2015, Neural Regeneration. Elsevier Inc., p. 301-319 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Transplantation
Regeneration
Investigational Therapies
Cell Transplantation
Peripheral Nervous System
5 Citations (Scopus)

Vibrio parahaemolyticus virulence determinants

De Souza Santos, M., Salomon, D., Li, P., Krachler, A. M. & Orth, K., Jun 5 2015, The Comprehensive Sourcebook of Bacterial Protein Toxins. Elsevier Inc., p. 230-260 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Vibrio parahaemolyticus
Virulence
Bacteria
Seafood
Gastroenteritis
2014

Challenges and new directions for cardiac reprogramming

Nam, Y. J. & Munshi, N., Jul 4 2014, Chemical Biology in Regenerative Medicine: Bridging Stem Cells and Future Therapies. wiley, p. 49-58 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fibroblasts
Cardiac Myocytes
Repair
Stem cells
Hematopoietic Stem Cell Mobilization

Rag GTPases

Jewell, J. L. & Guan, K. L., May 1 2014, Ras Superfamily Small G Proteins: Biology and Mechanisms 2: Transport. Springer International Publishing, p. 277-292 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

GTP Phosphohydrolases
Amino Acids
Availability
GTPase-Activating Proteins
Guanine Nucleotide Exchange Factors

Reading histone modifications

Ruan, C. & Li, B., May 1 2014, Fundamentals of Chromatin. Springer New York, Vol. 9781461486244. p. 355-373 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Histone Code
Post Translational Protein Processing
Histones
Reading
Chromatin
2013
1 Citation (Scopus)

Adult Neurogenesis

Hsieh, J. & Song, H., 2013, Epigenetic Regulation in the Nervous System. Elsevier Inc., p. 301-321 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neurogenesis

Biochemistry of Development: Striated Muscle

Bassel-Duby, R. & Olson, E. N., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 179-186 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemistry
Striated Muscle
Muscle
Myocardium
Skeletal Muscle
25 Citations (Scopus)

The oocyte-to-embryo transition

Robertson, S. & Lin, R., 2013, Advances in Experimental Medicine and Biology. Vol. 757. p. 351-372 22 p. (Advances in Experimental Medicine and Biology; vol. 757).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oocytes
Embryonic Structures
Proteins
Fertilization
Proteolysis
2012
3 Citations (Scopus)

An introduction to muscle

Hill, J. A. & Olson, E. N., 2012, Muscle. Elsevier Inc., Vol. 1. p. 3-9 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Muscles
1 Citation (Scopus)

Autophagy in cardiac physiology and disease

Hill, J. A., Lavandero, S. & Rothermel, B. A., 2012, Muscle. Elsevier Inc., Vol. 1. p. 405-422 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Autophagy
Heart Diseases

Cardiac plasticity in health and disease

Gondalia, R. B., Rothermel, B. A., Lavandero, S., Gillette, T. G. & Hill, J. A., Jan 1 2012, Translational Cardiology: Molecular Basis of Cardiac Metabolism, Cardiac Remodeling, Translational Therapies and Imaging Techniques. Humana Press Inc., p. 185-250 66 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Health

Ionic fluxes and genesis of the cardiac action potential

Wang, Y., DeMazumder, D. & Hill, J. A., 2012, Muscle. Elsevier Inc., Vol. 1. p. 67-85 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Action Potentials
1 Citation (Scopus)

Mechanisms of stress-induced cardiac hypertrophy

Frey, N., Olson, E. N. & Hill, J. A., 2012, Muscle. Elsevier Inc., Vol. 1. p. 481-494 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cardiomegaly
15 Citations (Scopus)

Reconstitution of modified chromatin templates for in vitro functional assays

Yun, M., Ruan, C., Huh, J. W. & Li, B., 2012, Methods in Molecular Biology. Vol. 833. p. 237-253 17 p. (Methods in Molecular Biology; vol. 833).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nucleosomes
Chromatin
Histone Code
Chromatin Assembly and Disassembly
Post Translational Protein Processing

Regulation of autophagy by insulin/IGF-1 signaling pathways

Troncoso, R., Vásquez-Trincado, C., Campo, A. D., Gatica, D., Morales, P. E., Paredes, F., Torrealba, N., Lopez-Crisosto, C., Pedrozo, Z., Garda, L., Díaz-Araya, G., Battiprolu, P. K., Nemchenko, A., Ferdous, A., Gillette, T. G., Hill, J. A. & Lavandero, S., 2012, Autophagy: Principles, Regulation and Roles in Disease. Nova Science Publishers, Inc., p. 181-194 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Autophagy
Somatomedins
Insulin
Pathology
Medical problems

Regulation of skeletal muscle development and function by micrornas

Liu, N. & Bassel-Duby, R., 2012, Muscle. Elsevier Inc., Vol. 2. p. 871-880 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Muscle Development
MicroRNAs
Skeletal Muscle
2011
3 Citations (Scopus)

Development of the endocrine pancreas

Cleaver, O. & Melton, D. A., Nov 3 2011, Joslin's Diabetes Mellitus: Fourteenth Edition. Wolters Kluwer Health Adis (ESP), p. 21-39 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Islets of Langerhans

Protein quality control in heart disease: Small heat shock proteins and autophagy

Tannous, P., Rothermel, B. A. & Hill, J. A., 2011, Small Stress Proteins and Human Diseases. Nova Science Publishers, Inc., p. 171-188 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Small Heat-Shock Proteins
Autophagy
Quality Control
Quality control
Heart Diseases

The role of the vitamin D receptor in bile acid homeostasis

Schmidt, D. R., Kliewer, S. A. & Mangelsdorf, D. J., 2011, Vitamin D. Elsevier Inc., p. 763-767 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lithocholic Acid
Calcitriol Receptors
Bile Acids and Salts
Homeostasis
Vitamin D
2010

Gene Expression Regulation: Chromatin Modification in the CNS

Hsieh, J., Tsai, A. & Ure, K., 2010, Encyclopedia of Neuroscience. Elsevier Ltd, p. 611-617 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Expression Regulation
Epigenomics
Chromatin
Chromatin Assembly and Disassembly
Histone Code

Histone Deacetylases in Cardiovascular Development and Disease

Young, B. D. & Olson, E. N., 2010, Heart Development and Regeneration. Elsevier Inc., p. 715-727 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Histone Deacetylases
Cardiovascular Diseases
Yeast
Yeasts
Gene expression

Protein quality control in heart disease: Small heat shock proteins and autophagy

Tannous, P., Rothermel, B. A. & Hill, J. A., Jan 1 2010, Small Stress Proteins and Human Diseases. Nova Science Publishers, Inc., p. 171-188 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Small Heat-Shock Proteins
Autophagy
Quality Control
Quality control
Heart Diseases

Ubiquitin-mediated regulation of protein kinases in nfκb signaling

Xu, M. & Chen, Z. J., 2010, Handbook of Cell Signaling, 2/e. Elsevier Inc., Vol. 2. p. 633-644 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ubiquitin
Protein Kinases
Phosphorylation
Ubiquitination
Chemical activation
11 Citations (Scopus)

Vascular Development

Cleaver, O. & Krieg, P. A., 2010, Heart Development and Regeneration. Elsevier Inc., p. 487-528 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endothelial cells
Blood vessels
Blood Vessels
Tissue
Cardiovascular system
2009
4 Citations (Scopus)

Development of the Pulmonary Endothelium in Development of the Pulmonary Circulation: Vasculogenesis and Angiogenesis

Schwarz, M. A. & Cleaver, O. B., Sep 11 2009, The Pulmonary Endothelium: Function in health and disease. John Wiley & Sons, Ltd, p. 1-24 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pulmonary Circulation
Endothelium
Lung
2008
11 Citations (Scopus)

Ultrastructural analysis of myoblast fusion in Drosophila

Zhang, S. & Chen, E., Jan 1 2008, Cell Fusion: Overviews and Methods. Humana Press, Vol. 475. p. 275-297 23 p. (Methods in Molecular Biology; vol. 475).

Research output: Chapter in Book/Report/Conference proceedingChapter

Myoblasts
Drosophila
Freeze Substitution
Cell Fusion
Freezing
2007
1 Citation (Scopus)

Dysregulation of microRNAs in human malignancy

O'Donnell-Mendell, K. A. & Mendell, J. T., Jan 1 2007, MicroRNAs: From Basic Science to Disease Biology. Cambridge University Press, p. 295-308 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

MicroRNAs
Neoplasms
Genes
RNA
Small Untranslated RNA

Part B: Directed Differentiation of Human Embryonic Stem Cells into Endothelial Cells

Soukup, C., Levenberg, S. & Cleaver, O., Jun 15 2007, Human Embryonic Stem Cells: The Practical Handbook. John Wiley & Sons, Ltd, p. 229-248 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endothelial cells
Stem cells
Endothelial Cells
Blood vessels
Tissue
8 Citations (Scopus)

Using immunoprecipitation to study protein-protein interactions in the hedgehog-signaling pathway

Tong, C. & Jiang, J., Sep 13 2007, Methods in Molecular Biology. Vol. 397. p. 215-229 15 p. (Methods in Molecular Biology; vol. 397).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunoprecipitation
Proteins
Signal Transduction
2006

Muscle development and differentiation

Olson, E. N., 2006, Principles of Molecular Medicine. Humana Press, p. 665-673 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Muscle Development
Skeletal Muscle
Myoblasts
Muscular Diseases
Giant Cells
2004
40 Citations (Scopus)

Analysis of the Cell Cycle in Zebrafish Embryos

Shepard, J. L., Stern, H. M., Pfaff, K. L. & Amatruda, J. F., 2004, Methods in Cell Biology. Vol. 76. p. 109-125 17 p. (Methods in Cell Biology; vol. 76).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nonmammalian Embryo
Antitumor Drug Screening Assays
Centrosome
Acridine Orange
Spindle Apparatus
6 Citations (Scopus)

Blood Vessel Signals During Development and Beyond

Cleaver, O., 2004, Current Topics in Developmental Biology. Vol. 62. p. 1-36 36 p. (Current Topics in Developmental Biology; vol. 62).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cell Adhesion
Blood Vessels
Signal Transduction
Epithelial Cells

Cardiac Development and Congenital Heart Disease

Srivastava, D. & Olson, E. N., Mar 19 2004, Molecular Basis of Cardiovascular Disease: A Companion to Braunwald's Heart Disease. Elsevier Inc., p. 217-224 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Heart Diseases