Research Output 1968 2019

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2019

Embryonic chimeras with human pluripotent stem cells

De Los Angeles, A., Sakurai, M. & Wu, J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 125-151 27 p. (Methods in Molecular Biology; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pluripotent Stem Cells
Primates
Blastocyst
Tankyrases
Cercopithecus aethiops

Ex Vivo Transposon-Mediated Genetic Screens for Cancer Gene Discovery

O'Donnell-Mendell, K. A., Guo, Y., Suresh, S., Updegraff, B. L. & Zhou, X., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 145-157 13 p. (Methods in Molecular Biology; vol. 1907).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neoplasm Genes
Genetic Association Studies
Mutagenesis
Intercellular Signaling Peptides and Proteins
Phenotype

Highly efficient derivation of pluripotent stem cells from mouse preimplantation and postimplantation embryos in serum-free conditions

De Los Angeles, A., Okamura, D. & Wu, J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 29-36 8 p. (Methods in Molecular Biology; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pluripotent Stem Cells
Blastocyst
Serum
Germ Layers
Axin Protein

Methods for renal lineage tracing: In vivo and beyond

Drake, K. A., Fessler, A. R. & Carroll, T. J., Jan 1 2019, Methods in Cell Biology. Academic Press Inc., (Methods in Cell Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Kidney Diseases
Organogenesis
Kidney
Spatio-Temporal Analysis
Developmental Biology

Pig chimeric model with human pluripotent stem cells

Zhong, C., Wu, J. & Izpisua Belmonte, J. C., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 101-124 24 p. (Methods in Molecular Biology; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pluripotent Stem Cells
Swine
Embryonic Structures
Tissue Donors
Regenerative Medicine
2018

Developmental molecular biology of the pancreas

Murtaugh, L. C., Cleaver, O. & MacDonald, R. J., Apr 11 2018, Pancreatic Cancer. Springer New York, p. 89-145 57 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Developmental Biology
Molecular Biology
Pancreas
Intrinsic Factor
Organogenesis

Genome-wide identification of transcription factor-binding sites in quiescent adult neural stem cells

Mukherjee, S. & Hsieh, J., 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1686. p. 265-286 22 p. (Methods in Molecular Biology; vol. 1686).

Research output: Chapter in Book/Report/Conference proceedingChapter

Histone Code
Adult Stem Cells
Neural Stem Cells
Transcription Factors
Binding Sites

High-throughput characterization of primary microRNA transcripts

Chang, T. C. & Mendell, J. T., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 1-9 9 p. (Methods in Molecular Biology; vol. 1823).

Research output: Chapter in Book/Report/Conference proceedingChapter

MicroRNAs
RNA Sequence Analysis
Untranslated RNA
Polyadenylation
Publications
2017

Isolation and culture of oligodendrocyte precursor cells from prenatal and postnatal rodent brain

He, D., Meyer, B. & Richard Lu, Q., 2017, Neuromethods. Humana Press Inc., Vol. 126. p. 95-109 15 p. (Neuromethods; vol. 126).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oligodendroglia
Rodentia
Brain
Repair
Neurology
2 Citations (Scopus)

Live-cell imaging of the adult drosophila ovary using confocal microscopy

Shalaby, N. A. & Buszczak, M., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1463. p. 85-91 7 p. (Methods in Molecular Biology; vol. 1463).

Research output: Chapter in Book/Report/Conference proceedingChapter

Confocal Microscopy
Drosophila
Ovary
Stem Cells
Molecular Dynamics Simulation

microRNAs in Oligodendrocyte Myelination and Repair in the Central Nervous System

Zhao, X., Wang, H. & Lu, Q. R., Jan 1 2017, Essentials of Noncoding RNA in Neuroscience: Ontogenetics, Plasticity of the Vertebrate Brain. Elsevier Inc., p. 197-210 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Oligodendroglia
MicroRNAs
Central Nervous System
Demyelinating Diseases
Myelin Sheath
18 Citations (Scopus)

Mitochondria in structural and functional cardiac remodeling

Torrealba, N., Aranguiz, P., Alonso, C., Rothermel, B. A. & Lavandero, S., May 1 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 982. p. 277-306 30 p. (Advances in Experimental Medicine and Biology; vol. 982).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mitochondria
Cell death
Cell Death
Adenosine Triphosphate
Waste Products
2016

Biochemical analysis of Tankyrase activity in zebrafish in vitro and in vivo

Moon, J. & Amatruda, J. F., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1481. p. 95-100 6 p. (Methods in Molecular Biology; vol. 1481).

Research output: Chapter in Book/Report/Conference proceedingChapter

Tankyrases
Catenins
Zebrafish
Wnt Signaling Pathway
Enzyme Inhibitors
2 Citations (Scopus)

Methods to purify and assay secretory pathway kinases

Tagliabracci, V. S., Wen, J. & Xiao, J., Sep 1 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1496. p. 197-215 19 p. (Methods in Molecular Biology; vol. 1496).

Research output: Chapter in Book/Report/Conference proceedingChapter

Secretory Pathway
Phosphotransferases
Proteoglycans
Biological Phenomena
Protein Kinases

The role of epigenetics in the pathophysiology of epilepsy

Nam, S. M. & Cho, K. O., Nov 29 2016, Neuropsychiatric Disorders and Epigenetics. Elsevier Inc., p. 233-260 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Epigenomics
Epilepsy
Brain
Seizures
Untranslated RNA
1 Citation (Scopus)

Zebrafish as a model for the study of solid malignancies

Kendall, G. C. & Amatruda, J. F., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1451. p. 121-142 22 p. (Methods in Molecular Biology; vol. 1451).

Research output: Chapter in Book/Report/Conference proceedingChapter

Zebrafish
Oncogenes
Neoplasms
Carcinogenesis
Gene Transfer Techniques
2 Citations (Scopus)

Zebrafish germ cell tumors

Sanchez, A. & Amatruda, J. F., 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 916. p. 479-494 16 p. (Advances in Experimental Medicine and Biology; vol. 916).

Research output: Chapter in Book/Report/Conference proceedingChapter

Germ Cell and Embryonal Neoplasms
Zebrafish
Tumors
Cells
Neoplasms
2015

Developmental Roles of the Stroma

Carroll, T. & Kwartler, C. S., Jan 1 2015, Kidney Development, Disease, Repair and Regeneration. Elsevier Science Ltd., p. 133-145 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Kidney
Nephrons
Stromal Cells
Stem Cells
Pericytes
1 Citation (Scopus)

"Genuine" Casein Kinase (Fam20C): The Mother of the Phosphosecretome

Cozza, G., Tagliabracci, V. S., Dixon, J. E. & Pinna, L. A., Oct 1 2015, Kinomics: Approaches and Applications. wiley, p. 47-62 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Casein Kinases
Caseins
Casein Kinase I
Casein Kinase II
Peptides
17 Citations (Scopus)

The Maternal-to-Zygotic Transition in C. elegans

Robertson, S. & Lin, R., 2015, Current Topics in Developmental Biology. Academic Press Inc., Vol. 113. p. 1-42 42 p. (Current Topics in Developmental Biology; vol. 113).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mothers
RNA-Binding Proteins
Caenorhabditis elegans
Blastomeres
Gastrulation

Transplantation of Olfactory Ensheathing Cells for Neural Repair

Su, Z. & He, C., Feb 6 2015, Neural Regeneration. Elsevier Inc., p. 301-319 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Transplantation
Regeneration
Investigational Therapies
Cell Transplantation
Peripheral Nervous System
5 Citations (Scopus)

Vibrio parahaemolyticus virulence determinants

De Souza Santos, M., Salomon, D., Li, P., Krachler, A. M. & Orth, K., Jun 5 2015, The Comprehensive Sourcebook of Bacterial Protein Toxins. Elsevier Inc., p. 230-260 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Vibrio parahaemolyticus
Virulence
Bacteria
Seafood
Gastroenteritis
2014

Challenges and new directions for cardiac reprogramming

Nam, Y. J. & Munshi, N., Jul 4 2014, Chemical Biology in Regenerative Medicine: Bridging Stem Cells and Future Therapies. wiley, p. 49-58 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fibroblasts
Cardiac Myocytes
Repair
Stem cells
Hematopoietic Stem Cell Mobilization

Rag GTPases

Jewell, J. L. & Guan, K. L., May 1 2014, Ras Superfamily Small G Proteins: Biology and Mechanisms 2: Transport. Springer International Publishing, p. 277-292 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

GTP Phosphohydrolases
Amino Acids
Availability
GTPase-Activating Proteins
Guanine Nucleotide Exchange Factors

Reading histone modifications

Ruan, C. & Li, B., May 1 2014, Fundamentals of Chromatin. Springer New York, Vol. 9781461486244. p. 355-373 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Histone Code
Post Translational Protein Processing
Histones
Reading
Chromatin
2013
1 Citation (Scopus)

Adult Neurogenesis

Hsieh, J. & Song, H., 2013, Epigenetic Regulation in the Nervous System. Elsevier Inc., p. 301-321 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neurogenesis

Biochemistry of Development: Striated Muscle

Bassel-Duby, R. & Olson, E. N., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 179-186 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemistry
Striated Muscle
Muscle
Myocardium
Skeletal Muscle
25 Citations (Scopus)

The oocyte-to-embryo transition

Robertson, S. & Lin, R., 2013, Advances in Experimental Medicine and Biology. Vol. 757. p. 351-372 22 p. (Advances in Experimental Medicine and Biology; vol. 757).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oocytes
Embryonic Structures
Proteins
Fertilization
Proteolysis
2012
3 Citations (Scopus)

An introduction to muscle

Hill, J. A. & Olson, E. N., 2012, Muscle. Elsevier Inc., Vol. 1. p. 3-9 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Muscle
1 Citation (Scopus)

Autophagy in cardiac physiology and disease

Hill, J. A., Lavandero, S. & Rothermel, B. A., 2012, Muscle. Elsevier Inc., Vol. 1. p. 405-422 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Autophagy
Heart Diseases
1 Citation (Scopus)

Cardiac plasticity in health and disease

Gondalia, R. B., Rothermel, B. A., Lavandero, S., Gillette, T. G. & Hill, J. A., Jan 1 2012, Translational Cardiology: Molecular Basis of Cardiac Metabolism, Cardiac Remodeling, Translational Therapies and Imaging Techniques. Humana Press Inc., p. 185-250 66 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Health

Ionic fluxes and genesis of the cardiac action potential

Wang, Y., DeMazumder, D. & Hill, J. A., 2012, Muscle. Elsevier Inc., Vol. 1. p. 67-85 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fluxes
1 Citation (Scopus)

Mechanisms of stress-induced cardiac hypertrophy

Frey, N., Olson, E. N. & Hill, J. A., 2012, Muscle. Elsevier Inc., Vol. 1. p. 481-494 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

15 Citations (Scopus)

Reconstitution of modified chromatin templates for in vitro functional assays

Yun, M., Ruan, C., Huh, J. W. & Li, B., 2012, Methods in Molecular Biology. Vol. 833. p. 237-253 17 p. (Methods in Molecular Biology; vol. 833).

Research output: Chapter in Book/Report/Conference proceedingChapter

Nucleosomes
Chromatin
Histone Code
Chromatin Assembly and Disassembly
Post Translational Protein Processing

Regulation of autophagy by insulin/IGF-1 signaling pathways

Troncoso, R., Vásquez-Trincado, C., Campo, A. D., Gatica, D., Morales, P. E., Paredes, F., Torrealba, N., Lopez-Crisosto, C., Pedrozo, Z., Garda, L., Díaz-Araya, G., Battiprolu, P. K., Nemchenko, A., Ferdous, A., Gillette, T. G., Hill, J. A. & Lavandero, S., 2012, Autophagy: Principles, Regulation and Roles in Disease. Nova Science Publishers, Inc., p. 181-194 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Autophagy
Somatomedins
Insulin
Pathology
Medical problems

Regulation of skeletal muscle development and function by micrornas

Liu, N. & Bassel-Duby, R., 2012, Muscle. Elsevier Inc., Vol. 2. p. 871-880 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

MicroRNAs
Muscle
2011
3 Citations (Scopus)

Development of the endocrine pancreas

Cleaver, O. & Melton, D. A., Nov 3 2011, Joslin's Diabetes Mellitus: Fourteenth Edition. Wolters Kluwer Health Adis (ESP), p. 21-39 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Islets of Langerhans

Protein quality control in heart disease: Small heat shock proteins and autophagy

Tannous, P., Rothermel, B. A. & Hill, J. A., 2011, Small Stress Proteins and Human Diseases. Nova Science Publishers, Inc., p. 171-188 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Small Heat-Shock Proteins
Autophagy
Quality Control
Quality control
Heart Diseases

The role of the vitamin D receptor in bile acid homeostasis

Schmidt, D. R., Kliewer, S. A. & Mangelsdorf, D. J., 2011, Vitamin D. Elsevier Inc., p. 763-767 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lithocholic Acid
Calcitriol Receptors
Bile Acids and Salts
Homeostasis
Vitamin D
2010

Gene Expression Regulation: Chromatin Modification in the CNS

Hsieh, J., Tsai, A. & Ure, K., 2010, Encyclopedia of Neuroscience. Elsevier Ltd, p. 611-617 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Expression Regulation
Epigenomics
Chromatin
Chromatin Assembly and Disassembly
Histone Code

Histone Deacetylases in Cardiovascular Development and Disease

Young, B. D. & Olson, E. N., 2010, Heart Development and Regeneration. Elsevier Inc., p. 715-727 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Histone Deacetylases
Cardiovascular Diseases
Yeast
Yeasts
Gene expression

Protein quality control in heart disease: Small heat shock proteins and autophagy

Tannous, P., Rothermel, B. A. & Hill, J. A., Jan 1 2010, Small Stress Proteins and Human Diseases. Nova Science Publishers, Inc., p. 171-188 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Small Heat-Shock Proteins
Autophagy
Quality Control
Quality control
Heart Diseases

Ubiquitin-mediated regulation of protein kinases in nfκb signaling

Xu, M. & Chen, Z. J., 2010, Handbook of Cell Signaling, 2/e. Elsevier Inc., Vol. 2. p. 633-644 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ubiquitin
Protein Kinases
Phosphorylation
Ubiquitination
Chemical activation
11 Citations (Scopus)

Vascular Development

Cleaver, O. & Krieg, P. A., 2010, Heart Development and Regeneration. Elsevier Inc., p. 487-528 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endothelial cells
Blood vessels
Blood Vessels
Tissue
Cardiovascular system
2009
4 Citations (Scopus)

Development of the Pulmonary Endothelium in Development of the Pulmonary Circulation: Vasculogenesis and Angiogenesis

Schwarz, M. A. & Cleaver, O. B., Sep 11 2009, The Pulmonary Endothelium: Function in health and disease. John Wiley & Sons, Ltd, p. 1-24 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pulmonary Circulation
Endothelium
Lung
2008
11 Citations (Scopus)

Ultrastructural analysis of myoblast fusion in Drosophila

Zhang, S. & Chen, E., Jan 1 2008, Cell Fusion: Overviews and Methods. Humana Press, Vol. 475. p. 275-297 23 p. (Methods in Molecular Biology; vol. 475).

Research output: Chapter in Book/Report/Conference proceedingChapter

Myoblasts
Drosophila
Freeze Substitution
Cell Fusion
Freezing
2007
1 Citation (Scopus)

Dysregulation of microRNAs in human malignancy

O'Donnell-Mendell, K. A. & Mendell, J. T., Jan 1 2007, MicroRNAs: From Basic Science to Disease Biology. Cambridge University Press, p. 295-308 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

MicroRNAs
Neoplasms
Genes
RNA
Small Untranslated RNA

Part B: Directed Differentiation of Human Embryonic Stem Cells into Endothelial Cells

Soukup, C., Levenberg, S. & Cleaver, O., Jun 15 2007, Human Embryonic Stem Cells: The Practical Handbook. John Wiley & Sons, Ltd, p. 229-248 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Endothelial cells
Stem cells
Endothelial Cells
Blood vessels
Tissue
9 Citations (Scopus)

Using immunoprecipitation to study protein-protein interactions in the hedgehog-signaling pathway

Tong, C. & Jiang, J., Sep 13 2007, Methods in Molecular Biology. Vol. 397. p. 215-229 15 p. (Methods in Molecular Biology; vol. 397).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunoprecipitation
Proteins
Signal Transduction
2006

Muscle development and differentiation

Olson, E. N., 2006, Principles of Molecular Medicine. Humana Press, p. 665-673 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Muscle Development
Skeletal Muscle
Myoblasts
Muscular Diseases
Giant Cells