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NR-Lab Takahashi

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  • 2024

    Dietary restriction modulates ultradian rhythms and autocorrelation properties in mice behavior

    Kembro, J. M., Flesia, A. G., Acosta-Rodríguez, V. A., Takahashi, J. S. & Nieto, P. S., Dec 2024, In: Communications Biology. 7, 1, 303.

    Research output: Contribution to journal › Article › peer-review

  • 2023

    Author Correction: Universal DNA methylation age across mammalian tissues (Nature Aging, (2023), 10.1038/s43587-023-00462-6)

    Lu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., Lowe, R., Yan, Q., Zhang, J., Vu, H., Ablaeva, J., Acosta-Rodriguez, V. A., Adams, D. M., Almunia, J., Aloysius, A., Ardehali, R., Arneson, A., Baker, C. S., Banks, G., Belov, K., & 168 othersBennett, N. C., Black, P., Blumstein, D. T., Bors, E. K., Breeze, C. E., Brooke, R. T., Brown, J. L., Carter, G. G., Caulton, A., Cavin, J. M., Chakrabarti, L., Chatzistamou, I., Chen, H., Cheng, K., Chiavellini, P., Choi, O. W., Clarke, S. M., Cooper, L. N., Cossette, M. L., Day, J., DeYoung, J., DiRocco, S., Dold, C., Ehmke, E. E., Emmons, C. K., Emmrich, S., Erbay, E., Erlacher-Reid, C., Faulkes, C. G., Ferguson, S. H., Finno, C. J., Flower, J. E., Gaillard, J. M., Garde, E., Gerber, L., Gladyshev, V. N., Gorbunova, V., Goya, R. G., Grant, M. J., Green, C. B., Hales, E. N., Hanson, M. B., Hart, D. W., Haulena, M., Herrick, K., Hogan, A. N., Hogg, C. J., Hore, T. A., Huang, T., Izpisua Belmonte, J. C., Jasinska, A. J., Jones, G., Jourdain, E., Kashpur, O., Katcher, H., Katsumata, E., Kaza, V., Kiaris, H., Kobor, M. S., Kordowitzki, P., Koski, W. R., Krützen, M., Kwon, S. B., Larison, B., Lee, S. G., Lehmann, M., Lemaitre, J. F., Levine, A. J., Li, C., Li, X., Lim, A. R., Lin, D. T. S., Lindemann, D. M., Little, T. J., Macoretta, N., Maddox, D., Matkin, C. O., Mattison, J. A., McClure, M., Mergl, J., Meudt, J. J., Montano, G. A., Mozhui, K., Munshi-South, J., Naderi, A., Nagy, M., Narayan, P., Nathanielsz, P. W., Nguyen, N. B., Niehrs, C., O’Brien, J. K., O’Tierney Ginn, P., Odom, D. T., Ophir, A. G., Osborn, S., Ostrander, E. A., Parsons, K. M., Paul, K. C., Pellegrini, M., Peters, K. J., Pedersen, A. B., Petersen, J. L., Pietersen, D. W., Pinho, G. M., Plassais, J., Poganik, J. R., Prado, N. A., Reddy, P., Rey, B., Ritz, B. R., Robbins, J., Rodriguez, M., Russell, J., Rydkina, E., Sailer, L. L., Salmon, A. B., Sanghavi, A., Schachtschneider, K. M., Schmitt, D., Schmitt, T., Schomacher, L., Schook, L. B., Sears, K. E., Seifert, A. W., Seluanov, A., Shafer, A. B. A., Shanmuganayagam, D., Shindyapina, A. V., Simmons, M., Singh, K., Sinha, I., Slone, J., Snell, R. G., Soltanmaohammadi, E., Spangler, M. L., Spriggs, M. C., Staggs, L., Stedman, N., Steinman, K. J., Stewart, D. T., Sugrue, V. J., Szladovits, B., Takahashi, J. S., Takasugi, M., Teeling, E. C., Thompson, M. J., Van Bonn, B., Vernes, S. C., Villar, D., Vinters, H. V., Wallingford, M. C., Wang, N., Wayne, R. K., Wilkinson, G. S., Williams, C. K., Williams, R. W., Yang, X. W., Yao, M., Young, B. G., Zhang, B., Zhang, Z., Zhao, P., Zhao, Y., Zhou, W., Zimmermann, J., Ernst, J., Raj, K. & Horvath, S., 2023, (Accepted/In press) In: Nature Aging.

    Research output: Contribution to journal › Comment/debate › peer-review

    Open Access
    1 Scopus citations

  • DNA methylation networks underlying mammalian traits

    Haghani, A., Li, C. Z., Robeck, T. R., Zhang, J., Lu, A. T., Ablaeva, J., Acosta-Rodríguez, V. A., Adams, D. M., Alagaili, A. N., Almunia, J., Aloysius, A., Amor, N. M. S., Ardehali, R., Arneson, A., Scott Baker, C., Banks, G., Belov, K., Bennett, N. C., Black, P., Blumstein, D. T., & 170 othersBors, E. K., Breeze, C. E., Brooke, R. T., Brown, J. L., Carter, G., Caulton, A., Cavin, J. M., Chakrabarti, L., Chatzistamou, I., Chavez, A. S., Chen, H., Cheng, K., Chiavellini, P., Choi, O. W., Clarke, S., Cook, J. A., Cooper, L. N., Cossette, M. L., Day, J., DeYoung, J., Dirocco, S., Dold, C., Dunnum, J. L., Ehmke, E. E., Emmons, C. K., Emmrich, S., Erbay, E., Erlacher-Reid, C., Faulkes, C. G., Fei, Z., Ferguson, S. H., Finno, C. J., Flower, J. E., Gaillard, J. M., Garde, E., Gerber, L., Gladyshev, V. N., Goya, R. G., Grant, M. J., Green, C. B., Bradley Hanson, M., Hart, D. W., Haulena, M., Herrick, K., Hogan, A. N., Hogg, C. J., Hore, T. A., Huang, T., Belmonte, J. C. I., Jasinska, A. J., Jones, G., Jourdain, E., Kashpur, O., Katcher, H., Katsumata, E., Kaza, V., Kiaris, H., Kobor, M. S., Kordowitzki, P., Koski, W. R., Krötzen, M., Kwon, S. B., Larison, B., Lee, S. G., Lehmann, M., Lema tre, J. F., Levine, A. J., Li, X., Li, C., Lim, A. R., Lin, D. T. S., Lindemann, D. M., Liphardt, S. W., Little, T. J., Macoretta, N., Maddox, D., Matkin, C. O., Mattison, J. A., McClure, M., Mergl, J., Meudt, J. J., Montano, G. A., Mozhui, K., Munshi-South, J., Murphy, W. J., Naderi, A., Nagy, M., Narayan, P., Nathanielsz, P. W., Nguyen, N. B., Niehrs, C., Nyamsuren, B., O'Brien, J. K., Ginn, P. O. T., Odom, D. T., Ophir, A. G., Osborn, S., Ostrander, E. A., Parsons, K. M., Paul, K. C., Pedersen, A. B., Pellegrini, M., Peters, K. J., Petersen, J. L., Pietersen, D. W., Pinho, G. M., Plassais, J., Poganik, J. R., Prado, N. A., Reddy, P., Rey, B., Ritz, B. R., Robbins, J., Rodriguez, M., Russell, J., Rydkina, E., Sailer, L. L., Salmon, A. B., Sanghavi, A., Schachtschneider, K. M., Schmitt, D., Schmitt, T., Schomacher, L., Schook, L. B., Sears, K. E., Seifert, A. W., Shafer, A. B. A., Shindyapina, A. V., Simmons, M., Singh, K., Sinha, I., Slone, J., Snell, R. G., Soltanmohammadi, E., Spangler, M. L., Spriggs, M., Staggs, L., Stedman, N., Steinman, K. J., Stewart, D. T., Sugrue, V. J., Szladovits, B., Takahashi, J. S., Takasugi, M., Teeling, E. C., Thompson, M. J., Bonn, B. V., Vernes, S. C., Villar, D., Vinters, H. V., Vu, H., Wallingford, M. C., Wang, N., Wilkinson, G. S., Williams, R. W., Yan, Q., Yao, M., Young, B. G., Zhang, B., Zhang, Z., Zhao, Y., Zhao, P., Zhou, W., Zoller, J. A., Ernst, J., Seluanov, A., Gorbunova, V., William Yang, X., Raj, K. & Horvath, S., Aug 1 2023, In: Science. 381, 6658, eabq5693.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    10 Scopus citations

  • Universal DNA methylation age across mammalian tissues

    Lu, A. T., Fei, Z., Haghani, A., Robeck, T. R., Zoller, J. A., Li, C. Z., Lowe, R., Yan, Q., Zhang, J., Vu, H., Ablaeva, J., Acosta-Rodriguez, V. A., Adams, D. M., Almunia, J., Aloysius, A., Ardehali, R., Arneson, A., Baker, C. S., Banks, G., Belov, K., & 168 othersBennett, N. C., Black, P., Blumstein, D. T., Bors, E. K., Breeze, C. E., Brooke, R. T., Brown, J. L., Carter, G. G., Caulton, A., Cavin, J. M., Chakrabarti, L., Chatzistamou, I., Chen, H., Cheng, K., Chiavellini, P., Choi, O. W., Clarke, S. M., Cooper, L. N., Cossette, M. L., Day, J., DeYoung, J., DiRocco, S., Dold, C., Ehmke, E. E., Emmons, C. K., Emmrich, S., Erbay, E., Erlacher-Reid, C., Faulkes, C. G., Ferguson, S. H., Finno, C. J., Flower, J. E., Gaillard, J. M., Garde, E., Gerber, L., Gladyshev, V. N., Gorbunova, V., Goya, R. G., Grant, M. J., Green, C. B., Hales, E. N., Hanson, M. B., Hart, D. W., Haulena, M., Herrick, K., Hogan, A. N., Hogg, C. J., Hore, T. A., Huang, T., Izpisua Belmonte, J. C., Jasinska, A. J., Jones, G., Jourdain, E., Kashpur, O., Katcher, H., Katsumata, E., Kaza, V., Kiaris, H., Kobor, M. S., Kordowitzki, P., Koski, W. R., Krützen, M., Kwon, S. B., Larison, B., Lee, S. G., Lehmann, M., Lemaitre, J. F., Levine, A. J., Li, C., Li, X., Lim, A. R., Lin, D. T. S., Lindemann, D. M., Little, T. J., Macoretta, N., Maddox, D., Matkin, C. O., Mattison, J. A., McClure, M., Mergl, J., Meudt, J. J., Montano, G. A., Mozhui, K., Munshi-South, J., Naderi, A., Nagy, M., Narayan, P., Nathanielsz, P. W., Nguyen, N. B., Niehrs, C., O’Brien, J. K., O’Tierney Ginn, P., Odom, D. T., Ophir, A. G., Osborn, S., Ostrander, E. A., Parsons, K. M., Paul, K. C., Pellegrini, M., Peters, K. J., Pedersen, A. B., Petersen, J. L., Pietersen, D. W., Pinho, G. M., Plassais, J., Poganik, J. R., Prado, N. A., Reddy, P., Rey, B., Ritz, B. R., Robbins, J., Rodriguez, M., Russell, J., Rydkina, E., Sailer, L. L., Salmon, A. B., Sanghavi, A., Schachtschneider, K. M., Schmitt, D., Schmitt, T., Schomacher, L., Schook, L. B., Sears, K. E., Seifert, A. W., Seluanov, A., Shafer, A. B. A., Shanmuganayagam, D., Shindyapina, A. V., Simmons, M., Singh, K., Sinha, I., Slone, J., Snell, R. G., Soltanmaohammadi, E., Spangler, M. L., Spriggs, M. C., Staggs, L., Stedman, N., Steinman, K. J., Stewart, D. T., Sugrue, V. J., Szladovits, B., Takahashi, J. S., Takasugi, M., Teeling, E. C., Thompson, M. J., Van Bonn, B., Vernes, S. C., Villar, D., Vinters, H. V., Wallingford, M. C., Wang, N., Wayne, R. K., Wilkinson, G. S., Williams, C. K., Williams, R. W., Yang, X. W., Yao, M., Young, B. G., Zhang, B., Zhang, Z., Zhao, P., Zhao, Y., Zhou, W., Zimmermann, J., Ernst, J., Raj, K. & Horvath, S., Sep 2023, In: Nature Aging. 3, 9, p. 1144-1166 23 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    39 Scopus citations
  • 2022

    A missense mutation in Kcnc3 causes hippocampal learning deficits in mice

    Xu, P., Shimomura, K., Lee, C., Gao, X., Simpson, E. H., Huang, G., Joseph, C. M., Kumar, V., Ge, W. P., Pawlowski, K. S., Frye, M. D., Kourrich, S., Kandel, E. R. & Takahashi, J. S., Aug 2 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 31, e2204901119.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Circadian alignment of early onset caloric restriction promotes longevity in male C57BL/6J mice

    Acosta-Rodríguez, V., Rijo-Ferreira, F., Izumo, M., Xu, P., Wight-Carter, M., Green, C. B. & Takahashi, J. S., Jun 10 2022, In: Science. 376, 6598, p. 1192-1202 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    127 Scopus citations
  • 2021

    Importance of circadian timing for aging and longevity

    Acosta-Rodríguez, V. A., Rijo-Ferreira, F., Green, C. B. & Takahashi, J. S., Dec 1 2021, In: Nature communications. 12, 1, 2862.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    99 Scopus citations
  • 2020

    An essential role for mef2c in the cortical response to loss of sleep in mice

    Bjorness, T. E., Kulkarni, A., Rybalchenko, V., Suzuki, A., Bridges, C., Harrington, A. J., Cowan, C. W., Takahashi, J. S., Konopka, G. & Greene, R. W., Aug 2020, In: eLife. 9, p. 1-46 46 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    15 Scopus citations

  • Chemical perturbations reveal that RUVBL2 regulates the circadian phase in mammals

    Ju, D., Zhang, W., Yan, J., Zhao, H., Li, W., Wang, J., Liao, M., Xu, Z., Wang, Z., Zhou, G., Mei, L., Hou, N., Ying, S., Cai, T., Chen, S., Xie, X., Lai, L., Tang, C., Park, N., Takahashi, J. S., & 3 othersHuang, N., Qi, X. & Zhang, E. E., May 6 2020, In: Science translational medicine. 12, 542, eaba0769.

    Research output: Contribution to journal › Article › peer-review

    24 Scopus citations

  • Dual-Color Single-Cell Imaging of the Suprachiasmatic Nucleus Reveals a Circadian Role in Network Synchrony

    Shan, Y., Abel, J. H., Li, Y., Izumo, M., Cox, K. H., Jeong, B., Yoo, S. H., Olson, D. P., Doyle, F. J. & Takahashi, J. S., Oct 14 2020, In: Neuron. 108, 1, p. 164-179.e7

    Research output: Contribution to journal › Article › peer-review

    Open Access
    37 Scopus citations

  • Epigenetic inheritance of circadian period in clonal cells

    Li, Y., Shan, Y., Kilaru, G., Berto, S., Wang, G. Z., Cox, K. H., Yoo, S. H., Yang, S., Konopka, G. & Takahashi, J. S., May 2020, In: eLife. 9, p. 1-36 36 p., e54186.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    13 Scopus citations

  • Loss of Arc attenuates the behavioral and molecular responses for sleep homeostasis in mice

    Suzuki, A., Yanagisawa, M. & Greene, R. W., May 12 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 19, p. 10547-10553 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    13 Scopus citations

  • The malaria parasite has an intrinsic clock

    Rijo-Ferreira, F., Acosta-Rodriguez, V. A., Abel, J. H., Kornblum, I., Bento, I., Kilaru, G., Klerman, E. B., Mota, M. M. & Takahashi, J. S., May 15 2020, In: Science. 368, 6492, p. 746-753 8 p.

    Research output: Contribution to journal › Article › peer-review

    54 Scopus citations
  • 2019

    Profiling allele-specific gene expression in brains from individuals with autism spectrum disorder reveals preferential minor allele usage

    Lee, C., Kang, E. Y., Gandal, M. J., Eskin, E. & Geschwind, D. H., Sep 1 2019, In: Nature neuroscience. 22, 9, p. 1521-1532 12 p.

    Research output: Contribution to journal › Article › peer-review

    23 Scopus citations

  • Tissue-specific FAH deficiency alters sleep-wake patterns and results in chronic tyrosinemia in mice

    Yang, S., Siepka, S. M., Cox, K. H., Kumar, V., De Groot, M., Chelliah, Y., Chen, J., Tu, B. & Takahashi, J. S., Oct 29 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 44, p. 22229-22236 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    3 Scopus citations
  • 2015

    A novel Bmal1 mutant mouse reveals essential roles of the C-terminal domain on circadian rhythms

    Park, N., Kim, H. D., Cheon, S., Row, H., Lee, J., Han, D. H., Cho, S. & Kim, K., Sep 22 2015, In: PloS one. 10, 9, e0138661.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    17 Scopus citations
  • 2011

    Impaired activity-dependent plasticity of quantal amplitude at the neuromuscular junction of Rab3A Deletion and Rab3A earlybird mutant mice

    Wang, X., Wang, Q., Yang, S., Bucan, M., Rich, M. M. & Engisch, K. L., Mar 9 2011, In: Journal of Neuroscience. 31, 10, p. 3580-3588 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5 Scopus citations