Research Output

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2020

Labeling of the schistosoma mansoni tegument

Wendt, G. & Collins, J. J., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 65-74 10 p. (Methods in Molecular Biology; vol. 2151).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

CHAPTER 2: Mechanisms of Antisense Oligonucleotides

Liu, Z. & Corey, D. R., Jan 1 2019, Therapies for Retinal Degeneration: Targeting Common Processes. Agrawal, S. & Gait, M. J. (eds.). 68 ed. Royal Society of Chemistry, p. 22-31 10 p. (RSC Drug Discovery Series; vol. 2019-January, no. 68).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Hypoxia mediates tumor malignancy and therapy resistance

Luo, W. & Wang, Y., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 1-18 18 p. (Advances in Experimental Medicine and Biology; vol. 1136).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations

Small Molecule-Based Inducible Gene Therapies for Retinal Degeneration

Datta, S., Peng, H. & Hulleman, J. D., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer, p. 65-69 5 p. (Advances in Experimental Medicine and Biology; vol. 1185).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Structural and Biochemical Analyses of the Core Components of the Hippo Pathway

Ni, L. & Luo, X., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 239-256 18 p. (Methods in Molecular Biology; vol. 1893).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2018

Generating protein-linked and protein-free mono-, oligo-, and poly(ADP-ribose) in vitro

Lin, K. Y., Huang, D. & Lee Kraus, W., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 91-108 18 p. (Methods in Molecular Biology; vol. 1813).

Research output: Chapter in Book/Report/Conference proceedingChapter

Identifying genomic sites of adp-ribosylation mediated by specific nuclear parp enzymes using Click-ChIP

Rogge, R. A., Gibson, B. A. & Kraus, W. L., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 371-387 17 p. (Methods in Molecular Biology; vol. 1813).

Research output: Chapter in Book/Report/Conference proceedingChapter

The molecular biology of lung cancer

Larsen, J. E. & Minna, J. D., Nov 16 2018, DeVita, Hellman, and Rosenberg's Cancer: Principles & Practice of Oncology. Wolters Kluwer Health Pharma Solutions (Europe) Ltd, p. 607-618 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

Biochemical and functional assays of human cohesin-releasing factor Wapl

Zheng, G., Ouyang, Z. & Yu, H., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1515. p. 37-53 17 p. (Methods in Molecular Biology; vol. 1515).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Drivers of EMT and immune evasion

Brekken, R. A. & Wnuk-Lipinska, K., Aug 2 2017, Biomarkers of the Tumor Microenvironment: Basic Studies and Practical Applications. Springer International Publishing, p. 221-239 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Identification of protein substrates of specific PARP enzymes using analog-sensitive PARP mutants and a “Clickable” NAD+ analog

Gibson, B. A. & Kraus, W. L., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1608. p. 111-135 25 p. (Methods in Molecular Biology; vol. 1608).

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Medicinal Chemistry Case History: Discovery of the Dihydroorate Dehydrogenase Inhibitor DSM265 as an Antimalarial Drug Candidate

Phillips, M. A., Rathod, P. K., Rueckle, T., Matthews, D., Burrows, J. N. & Charman, S. A., Jun 3 2017, Case Histories in Recent Drug Discovery. Elsevier Inc., Vol. 8-8. p. 544-557 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Methods for studying the germline of the human parasite schistosoma mansoni

Collins, J. N. R. & Collins, J. J., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1463. p. 35-47 13 p. (Methods in Molecular Biology; vol. 1463).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Rattus norvegicus spermatogenesis colony-forming assays

Hamra, F. K., 2017, Methods in Molecular Biology. Humana Press Inc., Vol. 1463. p. 185-203 19 p. (Methods in Molecular Biology; vol. 1463).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA-mediated gene activation: Identifying a candidate RNA for preclinical development

Corey, D. R., 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 983. p. 161-171 11 p. (Advances in Experimental Medicine and Biology; vol. 983).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations
2016

Fluorescence imaging of the cytoskeleton in plant roots

Dyachok, J., Paez-Garcia, A., Yoo, C. M., Palanichelvam, K. & Blancaflor, E. B., 2016, Methods in Molecular Biology. Humana Press Inc., Vol. 1365. p. 139-153 15 p. (Methods in Molecular Biology; vol. 1365).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Malattia leventinese/doyne honeycomb retinal dystrophy: Similarities to age-related macular degeneration and potential therapies

Hulleman, J. D., Oct 1 2016, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 854. p. 153-158 6 p. (Advances in Experimental Medicine and Biology; vol. 854).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Mechanisms of homeostatically regulated behaviors

Elmquist, J. K., Zigman, J. M. & Saper, C. B., Jan 1 2016, Neuroscience in the 21st Century: From Basic to Clinical, Second Edition. Springer New York, p. 2087-2116 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular basis of lung carcinogenesis

Fong, K. M., Larsen, J. E., Wright, C., Sriram, K., Davidson, M., Daniels, M., Sekido, Y., Bowman, R. V., Yang, I. A. & Minna, J. D., Jan 1 2016, The Molecular Basis of Human Cancer. Springer New York, p. 447-496 50 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

NQO1 bioactivatable drugs enhance radiation responses

Bey, E. A., Meade, J. C., Silvers, M. A., Motea, E. A., Patidar, P. L., Brekken, R., Deja, S., Merritt, M. E., Kilgore, J. A., Liu, Y., Huang, X., Li, L., Yordy, J., Williams, N. S., Gao, J. & Boothman, D. A., Jan 1 2016, Strategies to Enhance the Therapeutic Ratio of Radiation as a Cancer Treatment. Springer International Publishing, p. 225-252 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2015

Biosynthesis of polyamines in eukaryotes, Archaea, and bacteria

Michael, A. J., Jan 1 2015, Polyamines: A Universal Molecular Nexus for Growth, Survival, and Specialized Metabolism. Springer Japan, p. 3-14 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Lung cancer

Larsen, J. E. & Minna, J. D., Jan 1 2015, Molecular Oncology: Causes of Cancer and Targets for Treatment. Cambridge University Press, p. 506-525 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Synthetic lethality and chemoresistance in cancer

Maxfield, K. & Whitehurst, A., Jan 1 2015, Systems Genetics: Linking Genotypes and Phenotypes. Cambridge University Press, p. 65-82 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Targeting the polyamine biosynthetic pathway in parasitic protozoa

Velez, N. & Phillips, M. A., Jan 1 2015, Polyamines: A Universal Molecular Nexus for Growth, Survival, and Specialized Metabolism. Springer Japan, p. 315-330 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2014

How drosophila detect volatile pheromones: Signaling, circuits, and behavior

Sengupta, S. & Smith, D. P., Jan 1 2014, Neurobiology of Chemical Communication. CRC Press, p. 229-254 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Identification and validation of miRNA target sites within nontraditional miRNA targets

Younger, S. T. & Corey, D. R., Sep 20 2014, Regulatory Non-Coding RNAs: Methods and Protocols. Springer New York, p. 53-67 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Molecular Basis of Lung Cancer

Larsen, J. E., Govindan, R. & Minna, J. D., Mar 1 2014, The Molecular Basis of Cancer: Fourth Edition. Elsevier Inc., p. 475-490.e1

Research output: Chapter in Book/Report/Conference proceedingChapter

Regulation of chromatin structure and function by PARP-1 and ADP-ribosylation

Liu, Z. & Kraus, W. L., May 1 2014, Fundamentals of Chromatin. Springer New York, Vol. 9781461486244. p. 309-339 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The liver in metabolic syndrome

D’amore, S., Palasciano, G. & Moschetta, A., Jan 1 2014, A Systems Biology Approach to Study Metabolic Syndrome. Springer International Publishing, p. 27-61 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2013

Adenylyl Cyclases

Taussig, R., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 42-46 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

bHLH Factors in Neurogenesis and Neuronal Subtype Specification

Lai, H. C., Meredith, D. M. & Johnson, J. E., May 2013, Comprehensive Developmental Neuroscience: Patterning and Cell Type Specification in the Developing CNS and PNS. Elsevier Inc., p. 333-354 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

Evolution-based design of proteins

Reynolds, K. A., Russ, W. P., Socolich, M. & Ranganathan, R., 2013, Methods in Protein Design. Academic Press Inc., p. 213-235 23 p. (Methods in Enzymology; vol. 523).

Research output: Chapter in Book/Report/Conference proceedingChapter

23 Scopus citations

Fluorescence fluctuation spectroscopy approaches to the study of receptors in live cells

Jameson, D. M., James, N. G. & Albanesi, J. P., 2013, Fluorescence Fluctuation Spectroscopy (FFS), Part B. Academic Press Inc., p. 87-113 27 p. (Methods in Enzymology; vol. 519).

Research output: Chapter in Book/Report/Conference proceedingChapter

8 Scopus citations

Glycoproteins, N-Linked

Lehrman, M. A., Feb 15 2013, Encyclopedia of Biological Chemistry: Second Edition. Elsevier Inc., p. 457-464 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Interactions Between Toxoplasma Effectors and Host Immune Responses

Butcher, B. A., Reese, M. L., Boothroyd, J. C. & Denkers, E. Y., Sep 1 2013, Toxoplasma Gondii: The Model Apicomplexan - Perspectives and Methods: Second Edition. Elsevier Ltd, p. 505-519 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Mannose-6-phosphate: A regulator of LLO destruction

Gao, N. & Lehrman, M. A., Jul 25 2013, Glycosyltransferases: Methods and Protocols. p. 277-282 6 p. (Methods in Molecular Biology; vol. 1022).

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Scopus citations

Mechanisms of homeostatically regulated behaviors

Elmquist, J. K., Zigman, J. M. & Saper, C. B., Nov 1 2013, Neuroscience in the 21st Century: From Basic to Clinical. Springer New York, p. 1753-1782 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Mouse models of pancreatic cancer

Ostapoff, K. T., Dellinger, M. T., Awasthi, N., Brekken, R. A. & Schwarz, R. E., Jan 1 2013, Experimental Metastasis: Modeling and Analysis. Springer Netherlands, p. 57-91 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Polymer implants for intratumoral drug delivery and cancer therapy

Weinberg, B. D. & Gao, J., Jan 1 2013, Polymeric Biomaterials: Medicinal and Pharmaceutical Applications, Volume 2. CRC Press, p. 221-244 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Regulation of Bone Resorption by PPARγ

Wei, W. & Wan, Y., Aug 29 2013, Translational Endocrinology of Bone. Elsevier Inc., p. 103-122 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

An overview of the molecular biology of lung cancer

Larsen, J. E., Spinola, M., Gazdar, A. F. & Minna, J. D., Feb 13 2012, Principles and Practice of Lung Cancer: The Official Reference Text of the International Association for the Study of Lung Cancer (IASLC): Fourth Edition. Wolters Kluwer Health Adis (ESP), p. 57-74 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Defective DNA Mismatch Repair-dependent c-Abl-p73-GADD45α Expression Confers Cancer Chemoresistance

Li, L. S., Wagner, M., Meyers, M. & Boothman, D. A., Dec 1 2012, DNA Repair in Cancer Therapy. Elsevier Inc., p. 191-210 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations
2011

An atlas for schistosoma mansoni organs and life-cycle stages using cell type-specific markers and confocal microscopy

Collins, J. J., King, R. S., Cogswell, A., Williams, D. L. & Newmark, P. A., Mar 2011, PLoS Neglected Tropical Diseases. 3 ed. Vol. 5. e1009

Research output: Chapter in Book/Report/Conference proceedingChapter

71 Scopus citations

Cellular Stress Responses to DNA Damage: An Intracellular Balance between Life, Senescence, and Death

Rommel, A. A., Goetz, E., Suzuki, M., Araki, S., Morales, J., Zou, Y., Luo, X., Boothman, D. A., Leskov, K. S., Matsuyama, S., Jackson, M. W., Veneziano, G. & Mayo, L. D., Jan 1 2011, Encyclopedia of Environmental Health. Elsevier Inc., p. 543-552 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Clinical applications of heme biosynthetic pathway: Photodynamic therapy with protoporphyrin IX

Ding, H., Sumer, B. D. & Gao, J., Jan 1 2011, Heme Biology: The Secret Life of Heme in Regulating Diverse Biological Processes. World Scientific Publishing Co., p. 197-210 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Practical considerations for analyzing antigene RNAs (agRNAs): RNA immunoprecipitation of argonaute protein

Schwartz, J. C. & Corey, D. R., Aug 4 2011, Therapeutic Oligonucleotides: Methods and Protocols. Goodchild, J. (ed.). p. 301-315 15 p. (Methods in Molecular Biology; vol. 764).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

The role of the vitamin D receptor in bile acid homeostasis

Schmidt, D. R., Kliewer, S. A. & Mangelsdorf, D. J., Dec 1 2011, Vitamin D. Elsevier Inc., p. 763-767 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Comprehensive Metabolic Analysis for Understanding of Disease

Newgard, C. B., Stevens, R. D., Wenner, B. R., Burgess, S. C., Ilkayeva, O., Muehlbauer, M. J., Dean Sherry, A. & Bain, J. R., Dec 1 2010, Essentials of Genomic and Personalized Medicine. Elsevier Inc., p. 97-107 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Contrast ultrasound in imaging tumor angiogenesis

Korpanty, G. & Brekken, R. A., Dec 1 2010, Vascular Disruptive Agents for the Treatment of Cancer. Springer New York, p. 165-179 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Contributions of the Extracellular Matrix to Tumorigenesis

Burdine, M. S. & Brekken, R. A., Aug 31 2010, Tumor Microenvironment. John Wiley and Sons, p. 35-52 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter