Research output per year
Research output per year
- 1 - 50 out of 229 results
Search results
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2022
A role for the mitotic proteins Bub3 and BuGZ in transcriptional regulation of catalase-3 expression
Zhou, Y., Shen, S., Du, C., Wang, Y., Liu, Y. & He, Q., Jun 6 2022, In: PLoS genetics. 18, 6, e1010254.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Author Correction: Decoupling PER phosphorylation, stability and rhythmic expression from circadian clock function by abolishing PER-CK1 interaction (Nature Communications, (2022), 13, 1, (3991), 10.1038/s41467-022-31715-4)
An, Y., Yuan, B., Xie, P., Gu, Y., Liu, Z., Wang, T., Li, Z., Xu, Y. & Liu, Y., Dec 2022, In: Nature communications. 13, 1, 4859.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Decoupling PER phosphorylation, stability and rhythmic expression from circadian clock function by abolishing PER-CK1 interaction
An, Y., Yuan, B., Xie, P., Gu, Y., Liu, Z., Wang, T., Li, Z., Xu, Y. & Liu, Y., Dec 2022, In: Nature communications. 13, 1, 3991.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
Highly conserved shifts in ubiquitin-proteasome system (UPS) activity drive mitochondrial remodeling during quiescence
Yue, S., Wang, L., DeMartino, G. N., Zhao, F. Z., Liu, Y. & Sieber, M. H., Dec 2022, In: Nature communications. 13, 1, 4462.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
2021
A role for the ribosome-associated complex in activation of the IRE1 branch of UPR
Wu, I. H., Yoon, J. S., Yang, Q., Liu, Y., Skach, W. & Thomas, P., Jun 8 2021, In: Cell Reports. 35, 10, 109217.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Codon usage and protein length-dependent feedback from translation elongation regulates translation initiation and elongation speed
Lyu, X., Yang, Q., Zhao, F. & Liu, Y., Sep 20 2021, In: Nucleic acids research. 49, 16, p. 9404-9423 20 p.Research output: Contribution to journal › Article › peer-review
Open Access21 Scopus citations -
Frq-ck1 interaction underlies temperature compensation of the neurospora circadian clock
Hu, Y., Liu, X., Lu, Q., Yang, Y., He, Q., Liu, Y. & Liu, X., 2021, In: mBio. 12, 3, e01425-21.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Reply to Qian and Zhang: Demonstration of the effect of codon usage on transcription by multiple approaches from fungi to animal cells
Zhao, F. & Liu, Y., May 18 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 20, e2104896118.Research output: Contribution to journal › Letter › peer-review
Open Access -
Synonymous but Not Silent: The Codon Usage Code for Gene Expression and Protein Folding
Liu, Y., Yang, Q. & Zhao, F., Jun 20 2021, In: Annual review of biochemistry. 90, p. 375-401 27 p.Research output: Contribution to journal › Review article › peer-review
Open Access70 Scopus citations -
2020
A code within the genetic code: Codon usage regulates co-translational protein folding
Liu, Y., Sep 9 2020, In: Cell Communication and Signaling. 18, 1, 145.Research output: Contribution to journal › Review article › peer-review
Open Access104 Scopus citations -
Adaptation of codon usage to tRNA I34 modification controls translation kinetics and proteome landscape
Lyu, X., Yang, Q., Li, L., Dang, Y., Zhou, Z., Chen, S. & Liu, Y., Jun 2020, In: PLoS genetics. 16, 6, 1008836.Research output: Contribution to journal › Article › peer-review
Open Access22 Scopus citations -
Author Correction: FRQ-CK1 interaction determines the period of circadian rhythms in Neurospora (Nature Communications, (2019), 10, 1, (4352), 10.1038/s41467-019-12239-w)
Liu, X., Chen, A., Caicedo-Casso, A., Cui, G., Du, M., He, Q., Lim, S., Kim, H. J., Hong, C. I. & Liu, Y., Dec 1 2020, In: Nature communications. 11, 1, 346.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
High-throughput discovery of genetic determinants of circadian misalignment
Sanger Institute Mouse Genetics Project, 2020, In: PLoS genetics. 16, 1, e1008577.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
Impaired function of the suprachiasmatic nucleus rescues the loss of body temperature homeostasis caused by time-restricted feeding
Zhang, Z., Zhai, Q., Gu, Y., Zhang, T., Huang, Z., Liu, Z., Liu, Y. & Xu, Y., Aug 15 2020, In: Science Bulletin. 65, 15, p. 1268-1280 13 p.Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
Nonoptimal codon usage is critical for protein structure and function of the master general amino acid control regulator CPC-1
Lyu, X. & Liu, Y., 2020, In: mBio. 11, 5, p. 1-11 11 p., e02605-20.Research output: Contribution to journal › Article › peer-review
Open Access19 Scopus citations -
2019
ERF1 mediates codon usage effects on mRNA translation efficiency through premature termination at rare codons
Yang, Q., Yu, C. H., Zhao, F., Dang, Y., Wu, C., Xie, P., Sachs, M. S. & Liu, Y., Sep 26 2019, In: Nucleic acids research. 47, 17, p. 9243-9258 16 p.Research output: Contribution to journal › Article › peer-review
Open Access33 Scopus citations -
2018
Codon usage biases co-evolve with transcription termination machinery to suppress premature cleavage and polyadenylation
Zhou, Z., Dang, Y., Zhou, M., Yuan, H. & Liu, Y., Mar 16 2018, In: eLife. 7, e33569.Research output: Contribution to journal › Article › peer-review
Open Access42 Scopus citations -
Codon usage regulates human KRAS expression at both transcriptional and translational levels
Fu, J., Dang, Y., Counter, C. & Liu, Y., Nov 16 2018, In: Journal of Biological Chemistry. 293, 46, p. 17929-17940 12 p.Research output: Contribution to journal › Article › peer-review
Open Access37 Scopus citations -
Comobility of GABARAP and Phosphatidylinositol 4-Kinase 2A on Cytoplasmic Vesicles
Chen, Y., Sun, H. Q., Eichorst, J. P., Albanesi, J. P., Yin, H. & Mueller, J. D., Jul 3 2018, In: Biochemistry. 57, 26, p. 3556-3559 4 p.Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
Transcription factor CBF-1 is critical for circadian gene expression by modulating WHITE COLLAR complex recruitment to the frq locus
Cao, X., Liu, X., Li, H., Fan, Y., Duan, J., Liu, Y. & He, Q., Sep 2018, In: PLoS genetics. 14, 9, e1007570.Research output: Contribution to journal › Article › peer-review
Open Access11 Scopus citations -
2017
Codon usage regulates protein structure and function by affecting translation elongation speed in Drosophila cells
Zhao, F., Yu, C. H. & Liu, Y., Aug 21 2017, In: Nucleic acids research. 45, 14, p. 8484-8492 9 p.Research output: Contribution to journal › Article › peer-review
Open Access76 Scopus citations -
DNA Replication Is Required for Circadian Clock Function by Regulating Rhythmic Nucleosome Composition
Liu, X., Dang, Y., Matsu-ura, T., He, Y., He, Q., Hong, C. I. & Liu, Y., Jul 20 2017, In: Molecular cell. 67, 2, p. 203-213.e4Research output: Contribution to journal › Article › peer-review
Open Access20 Scopus citations -
2016
Antisense transcription licenses nascent transcripts to mediate transcriptional gene silencing
Dang, Y., Cheng, J., Sun, X., Zhou, Z. & Liu, Y., Nov 1 2016, In: Genes and Development. 30, 21, p. 2417-2432 16 p.Research output: Contribution to journal › Article › peer-review
Open Access13 Scopus citations -
Codon usage affects the structure and function of the Drosophila circadian clock protein PERIOD
Fu, J., Murphy, K. A., Zhou, M., Li, Y. H., Lam, V. H., Tabuloc, C. A., Chiu, J. C. & Liu, Y., Aug 1 2016, In: Genes and Development. 30, 15, p. 1761-1775 15 p.Research output: Contribution to journal › Article › peer-review
Open Access49 Scopus citations -
Codon usage is an important determinant of gene expression levels largely through its effects on transcription
Zhoua, Z., Danga, Y., Zhou, M., Li, L., Yu, C. H., Fu, J., Chen, S. & Liu, Y., Oct 11 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 41, p. E6117-E6125Research output: Contribution to journal › Article › peer-review
Open Access270 Scopus citations -
Distinct Roles of HDAC3 in the Core Circadian Negative Feedback Loop Are Critical for Clock Function
Shi, G., Xie, P., Qu, Z., Zhang, Z., Dong, Z., An, Y., Xing, L., Liu, Z., Dong, Y., Xu, G., Yang, L., Liu, Y. & Xu, Y., Feb 2 2016, In: Cell Reports. 14, 4, p. 823-834 12 p.Research output: Contribution to journal › Article › peer-review
Open Access25 Scopus citations -
2015
Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding
Yu, C. H., Dang, Y., Zhou, Z., Wu, C., Zhao, F., Sachs, M. S. & Liu, Y., Sep 3 2015, In: Molecular cell. 59, 5, p. 744-754 11 p.Research output: Contribution to journal › Article › peer-review
Open Access370 Scopus citations -
GABARAP-mediated targeting of PI4K2A/PI4KIIatα autophagosomes regulates PtdIns4P-dependent autophagosome-lysosome fusion
Albanesi, J., Wang, H., Sun, H. Q., Levine, B. & Yin, H., Jan 1 2015, In: Autophagy. 11, 11, p. 2127-2129 3 p.Research output: Contribution to journal › Article › peer-review
Open Access31 Scopus citations -
GABARAPs regulate PI4P-dependent autophagosome: Lysosome fusion
Wang, H., Sun, H. Q., Zhu, X., Zhang, L., Albanesi, J., Levine, B. & Yin, H., Jun 2 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 22, p. 7015-7020 6 p.Research output: Contribution to journal › Article › peer-review
148 Scopus citations -
Mechanism of siRNA production from repetitive DNA
Yang, Q., Ye, Q. A. & Liu, Y., 2015, In: Genes and Development. 29, 5, p. 526-537 12 p.Research output: Contribution to journal › Article › peer-review
35 Scopus citations -
Mechanism of the Neurospora circadian clock, a FREQUENCY-centric view
Cha, J., Zhou, M. & Liu, Y., Jan 20 2015, In: Biochemistry. 54, 2, p. 150-156 7 p.Research output: Contribution to journal › Article › peer-review
34 Scopus citations -
Nonoptimal codon usage influences protein structure in intrinsically disordered regions
Zhou, M., Wang, T., Fu, J., Xiao, G. & Liu, Y., Sep 1 2015, In: Molecular Microbiology. 97, 5, p. 974-987 14 p.Research output: Contribution to journal › Article › peer-review
Open Access73 Scopus citations -
Role for protein kinase A in the Neurospora circadian clock by regulating white collar-independent frequency transcription through phosphorylation of RCM-1
Liu, X., Li, H., Liu, Q., Niu, Y., Hu, Q., Deng, H., Cha, J., Wang, Y., Liu, Y. & He, Q., 2015, In: Molecular and cellular biology. 35, 12, p. 2088-2102 15 p.Research output: Contribution to journal › Article › peer-review
Open Access24 Scopus citations -
Sustaining the Clinical and Translational Research Workforce: Training and Empowering the Next Generation of Investigators
Yin, H. L., Gabrilove, J., Jackson, R., Sweeney, C., Fair, A. M. & Toto, R., Jul 4 2015, In: Academic Medicine. 90, 7, p. 861-865 5 p.Research output: Contribution to journal › Review article › peer-review
Open Access58 Scopus citations -
2014
Erratum: CATP is a critical component of the Neurospora circadian clock by regulating the nucleosome occupancy rhythm at the frequency locus (EMBO reports (2013) 14 (923-930) DOI: 10.1038/embor.2013.131)
Cha, J., Zhou, M. & Liu, Y., 2014, In: EMBO Reports. 15, 10, p. 1102 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access1 Scopus citations -
Histone H3K56 acetylation is required for quelling-induced small RNA production through its role in homologous recombination
Zhang, Z., Yang, Q., Sun, G., Chen, S., He, Q., Li, S. & Liu, Y., Mar 30 2014, In: Journal of Biological Chemistry. 289, 13, p. 9365-9371 7 p.Research output: Contribution to journal › Article › peer-review
14 Scopus citations -
Methods to Study Molecular Mechanisms of the Neurospora Circadian Clock
Cha, J., Zhou, M. & Liu, Y., 2014, (Accepted/In press) In: Methods in Enzymology.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
Small RNA-mediated gene silencing in neurospora
Dang, Y., Zhang, Z. & Liu, Y., Mar 1 2014, Fungal RNA Biology. Springer International Publishing, p. 269-289 21 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
7 Scopus citations -
Transcriptional interference by antisense RNA is required for circadian clock function
Xue, Z., Ye, Q., Anson, S. R., Yang, J., Xiao, G., Kowbel, D., Glass, N. L., Crosthwaite, S. K. & Liu, Y., Oct 30 2014, In: Nature. 514, 7524, p. 650-653 4 p.Research output: Contribution to journal › Article › peer-review
Open Access78 Scopus citations -
2013
CATP is a critical component of the Neurospora circadian clock by regulating the nucleosome occupancy rhythm at the frequency locus
Cha, J., Zhou, M. & Liu, Y., Oct 2013, In: EMBO Reports. 14, 10, p. 923-930 8 p.Research output: Contribution to journal › Article › peer-review
Open Access26 Scopus citations -
Convergent Transcription Induces Dynamic DNA Methylation at disiRNA Loci
Dang, Y., Li, L., Guo, W., Xue, Z. & Liu, Y., Sep 2013, In: PLoS genetics. 9, 9, e1003761.Research output: Contribution to journal › Article › peer-review
34 Scopus citations -
Dual roles of FBXL3 in the mammalian circadian feedback loops are important for period determination and robustness of the clock
Shi, G., Xing, L., Liu, Z., Qu, Z., Wu, X., Dong, Z., Wang, X., Gao, X., Huang, M., Yan, J., Yang, L., Liu, Y., Ptáček, L. J. & Xu, Y., Mar 19 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 12, p. 4750-4755 6 p.Research output: Contribution to journal › Article › peer-review
Open Access36 Scopus citations -
Homologous recombination as a mechanism to recognize repetitive DNA sequences in an RNAi pathway
Zhang, Z., Chang, S. S., Zhang, Z., Xue, Z., Zhang, H., Li, S. & Liu, Y., 2013, In: Genes and Development. 27, 2, p. 145-150 6 p.Research output: Contribution to journal › Article › peer-review
37 Scopus citations -
Non-optimal codon usage affects expression, structure and function of clock protein FRQ
Zhou, M., Guo, J., Cha, J., Chae, M., Chen, S., Barral, J. M., Sachs, M. S. & Liu, Y., Mar 7 2013, In: Nature. 494, 7439, p. 111-115 5 p.Research output: Contribution to journal › Article › peer-review
Open Access303 Scopus citations -
Non-optimal codon usage is a mechanism to achieve circadian clock conditionality
Xu, Y., Ma, P., Shah, P., Rokas, A., Liu, Y. & Johnson, C. H., Mar 2013, In: Nature. 495, 7439, p. 116-120 5 p.Research output: Contribution to journal › Article › peer-review
Open Access138 Scopus citations -
Platelets lacking PIP5KIγ have normal integrin activation but impaired cytoskeletal-membrane integrity and adhesion
Wang, Y., Zhao, L., Suzuki, A., Lian, L., Min, S. H., Wang, Z., Litvinov, R. I., Stalker, T. J., Yago, T., Klopocki, A. G., Schmidtke, D. W., Yin, H., Choi, J. K., McEver, R. P., Weisel, J. W., Hartwig, J. H. & Abrams, C. S., 2013, In: Blood. 121, 14, p. 2743-2752 10 p.Research output: Contribution to journal › Article › peer-review
Open Access19 Scopus citations -
Suppression of WC-independent frequency transcription by RCO-1 is essential for Neurospora circadian clock
Zhou, Z., Liu, X., Hu, Q., Zhang, N., Sun, G., Cha, J., Wang, Y., Liu, Y. & He, Q., Dec 10 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 50, p. E4867-E4874Research output: Contribution to journal › Article › peer-review
35 Scopus citations -
The Ccr4-Not protein complex regulates the phase of the neurospora circadian clock by controlling WHITE COLLAR protein stability and activity
Huang, G., He, Q., Guo, J., Cha, J. & Liu, Y., Oct 25 2013, In: Journal of Biological Chemistry. 288, 43, p. 31002-31009 8 p.Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
The N-terminal region of the NeurosporaNDR kinase COT1 regulates morphology via its interactions with MOB2A/B
Ziv, C., Feldman, D., Aharoni-Kats, L., Chen, S., Liu, Y. & Yarden, O., Oct 2013, In: Molecular Microbiology. 90, 2, p. 383-399 17 p.Research output: Contribution to journal › Article › peer-review
Open Access19 Scopus citations -
Transcription of the Major Neurospora crassa microRNA-Like Small RNAs Relies on RNA Polymerase III
Yang, Q., Li, L., Xue, Z., Ye, Q., Zhang, L., Li, S. & Liu, Y., Jan 2013, In: PLoS genetics. 9, 1, e1003227.Research output: Contribution to journal › Article › peer-review
29 Scopus citations