RA-Radiological Science

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2020

A complex dual-modality kidney phantom for renal biopsy studies

Vargas, J., Le, P., Shahedi, M., Gahan, J., Johnson, B., Dormer, J. D., Shahub, S., Pfefferle, M., Judson, B. O., Alshara, Y., Li, Q. & Fei, B., Jan 1 2020, Medical Imaging 2020: Ultrasonic Imaging and Tomography. Byram, B. C. & Ruiter, N. V. (eds.). SPIE, 113190J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11319).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Development of a polarized hyperspectral microscope for cardiac fiber orientation imaging

Zhou, X., Dormer, J. & Fei, B., Jan 1 2020, Diagnostic and Therapeutic Applications of Light in Cardiology 2020. Gregory, K. W. & Marcu, L. (eds.). SPIE, 112150V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11215).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

A semiautomatic approach for prostate segmentation in MR images using local texture classification and statistical shape modeling

Shahedi, M., Halicek, M., Li, Q., Liu, L., Zhang, Z., Verma, S., Schuster, D. M. & Fei, B., Jan 1 2019, Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). SPIE, 109512I. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10951).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cancer detection using hyperspectral imaging and evaluation of the superficial tumor margin variance with depth

Halicek, M., Fabelo, H., Ortega, S., Little, J. V., Wang, X., Chen, A. Y., Callico, G. M., Myers, L. L., Sumer, B. D. & Fei, B., Jan 1 2019, Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). SPIE, 109511A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10951).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

Deep 3D convolutional neural networks for fast super-resolution ultrasound imaging

Brown, K., Dormer, J., Fei, B. & Hoyt, K., Jan 1 2019, Medical Imaging 2019: Ultrasonic Imaging and Tomography. Byram, B. C. & Ruiter, N. V. (eds.). SPIE, 1095502. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10955).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Detection of squamous cell carcinoma in digitized histological images from the head and neck using convolutional neural networks

Halicek, M., Shahedi, M., Little, J. V., Chen, A. Y., Myers, L. L., Sumer, B. D. & Fei, B., Jan 1 2019, Medical Imaging 2019: Digital Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 109560K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10956).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Radiomics analysis of MRI for predicting molecular subtypes of breast cancer in young women

Li, Q., Dormer, J., Daryani, P., Chen, D., Zhang, Z. & Fei, B., Jan 1 2019, Medical Imaging 2019: Computer-Aided Diagnosis. Mori, K. & Hahn, H. K. (eds.). SPIE, 1095044. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10950).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Surgical aid visualization system for glioblastoma tumor identification based on deep learning and in-vivo hyperspectral images of human patients

Fabelo, H., Halicek, M., Ortega, S., Szolna, A., Morera, J., Sarmiento, R., Callico, G. M. & Fei, B., Jan 1 2019, Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). SPIE, 1095110. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10951).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations
2018

Heart chamber segmentation from CT using convolutional neural networks

Dormer, J. D., Ma, L., Halicek, M., Reilly, C. M., Schreibmann, E. & Fei, B., Jan 1 2018, Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, 105782S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10578).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations
2017

Deep convolutional neural network for prostate MR segmentation

Tian, Z., Liu, L. & Fei, B., Jan 1 2017, Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling. Webster, R. J. & Fei, B. (eds.). SPIE, 101351L. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10135).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Estimating cardiac fiber orientations in pig hearts using registered ultrasound and MR image volumes

Dormer, J. D., Meng, Y., Zhang, X., Jiang, R., Wagner, M. B. & Fei, B., Jan 1 2017, Medical Imaging 2017: Ultrasonic Imaging and Tomography. Duric, N., Duric, N. & Heyde, B. (eds.). SPIE, 101391G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10139).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2016

Determining cardiac fiber orientation using FSL and registered ultrasound/DTI volumes

Dormer, J., Qin, X., Shen, M., Wang, S., Zhang, X., Jiang, R., Wagner, M. B. & Fei, B., Jan 1 2016, Medical Imaging 2016: Ultrasonic Imaging and Tomography. Heyde, B., Heyde, B. & Duric, N. (eds.). SPIE, 979015. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9790).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations
2015

3D in vivo imaging of rat hearts by high frequency ultrasound and its application in myofiber orientation wrapping

Qin, X., Wang, S., Shen, M., Zhang, X., Lerakis, S., Wagner, M. B. & Fei, B., Jan 1 2015, Medical Imaging 2015: Ultrasonic Imaging and Tomography. Duric, N. & Bosch, J. G. (eds.). SPIE, 941906. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9419).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

A fully automatic multi-atlas based segmentation method for prostate MR images

Tian, Z., Liu, L. & Fei, B., Jan 1 2015, Medical Imaging 2015: Image Processing. Styner, M. A. & Ourselin, S. (eds.). SPIE, 941340. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9413).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

A supervoxel-based segmentation method for prostate MR images

Tian, Z., Liu, L. & Fei, B., Jan 1 2015, Medical Imaging 2015: Image Processing. Styner, M. A. & Ourselin, S. (eds.). SPIE, 941318. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9413).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Register cardiac fiber orientations from 3D DTI volume to 2D ultrasound image of rat hearts

Qin, X., Wang, S., Shen, M., Zhang, X., Lerakis, S., Wagner, M. B. & Fei, B., Jan 1 2015, Medical Imaging 2015: Image-Guided Procedures, Robotic Interventions, and Modeling. Webster, R. J. & Yaniv, Z. R. (eds.). SPIE, 94152M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9415).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations
2014

A minimum spanning forest based hyperspectral image classification method for cancerous tissue detection

Pike, R., Patton, S. K., Lu, G., Halig, L. V., Wang, D., Chen, Z. G. & Fei, B., Jan 1 2014, Medical Imaging 2014: Image Processing. SPIE, 90341W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9034).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

14 Scopus citations

Breast tissue classification in digital tomosynthesis images based on global gradient minimization and texture features

Qin, X., Lu, G., Sechopoulos, I. & Fei, B., Jan 1 2014, Medical Imaging 2014: Image Processing. SPIE, 90341V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9034).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

13 Scopus citations

Hyperspectral imaging for cancer surgical margin delineation: Registration of hyperspectral and histological images

Lu, G., Halig, L., Wang, D., Chen, Z. G. & Fei, B., Jan 1 2014, Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, 90360S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9036).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

28 Scopus citations

Mapping cardiac fiber orientations from high-resolution DTI to high-frequency 3D ultrasound

Qin, X., Wang, S., Shen, M., Zhang, X., Wagner, M. B. & Fei, B., Jan 1 2014, Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling. SPIE, 90361O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9036).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations

Spectral-spatial classification using tensor modeling for cancer detection with hyperspectral imaging

Lu, G., Halig, L., Wang, D., Chen, Z. G. & Fei, B., Jan 1 2014, Medical Imaging 2014: Image Processing. SPIE, 903413. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9034).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

25 Scopus citations
2013

Accuracy evaluation of a 3D ultrasound-guided biopsy system

Wooten, W. J., Nye, J. A., Schuster, D. M., Nieh, P. T., Master, V. A., Votaw, J. R. & Fei, B., Jun 10 2013, Medical Imaging 2013: Image-Guided Procedures, Robotic Interventions, and Modeling. 86712H. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8671).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Automatic segmentation of right ventricle on ultrasound images using sparse matrix transform and level set

Qin, X., Cong, Z., Halig, L. V. & Fei, B., Jun 3 2013, Medical Imaging 2013: Image Processing. 86690Q. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8669).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations

Biodistribution study of nanoparticle encapsulated photodynamic therapy drugs using multispectral imaging

Halig, L. V., Wang, D., Wang, A. Y., Chen, Z. G. & Fei, B., Jun 3 2013, Medical Imaging 2013: Biomedical Applications in Molecular, Structural, and Functional Imaging. 867218. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8672).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Extracting cardiac myofiber orientations from high frequency ultrasound images

Qin, X., Cong, Z., Jiang, R., Shen, M., Wagner, M. B., Kishbom, P. & Fei, B., Jun 5 2013, Medical Imaging 2013: Ultrasonic Imaging, Tomography, and Therapy. 867507. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8675).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

11 Scopus citations

Histogram processing-based image enhancement of digital radiography for detection of cardiac calcification

Chen, X., Jin, J. & Fei, B., Apr 16 2013, World Congress on Medical Physics and Biomedical Engineering. p. 939-942 4 p. (IFMBE Proceedings; vol. 39 IFMBE).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2012

3D prostate segmentation of ultrasound images combining longitudinal image registration and machine learning

Yang, X. & Fei, B., May 1 2012, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling. 83162O. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

35 Scopus citations

A molecular image-directed, 3D ultrasound-guided biopsy system for the prostate

Fei, B., Schuster, D. M., Master, V., Akbari, H., Fenster, A. & Nieh, P., May 1 2012, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling. 831613. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8316).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

20 Scopus citations

Automatic 3D segmentation of the kidney in MR images using wavelet feature extraction and probability shape model

Akbari, H. & Fei, B., May 14 2012, Medical Imaging 2012: Image Processing. 83143D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8314).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Detection of cancer metastasis using a novel macroscopic hyperspectral method

Akbari, H., Halig, L. V., Zhang, H., Wang, D., Chen, Z. G. & Fei, B., May 14 2012, Medical Imaging 2012: Biomedical Applications in Molecular, Structural, and Functional Imaging. 831711. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8317).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

43 Scopus citations

Hyperspectral imaging and spectral-spatial classification for cancer detection

Fei, B., Akbari, H. & Halig, L. V., Dec 1 2012, 2012 5th International Conference on Biomedical Engineering and Informatics, BMEI 2012. p. 62-64 3 p. 6513047. (2012 5th International Conference on Biomedical Engineering and Informatics, BMEI 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

19 Scopus citations

Nonrigid registration and classification of the kidneys in 3D dynamic contrast enhanced (DCE) MR images

Yang, X., Ghafourian, P., Sharma, P., Salman, K., Martin, D. & Fei, B., May 14 2012, Medical Imaging 2012: Image Processing. 83140B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8314).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

16 Scopus citations
2011

3D non-rigid registration using surface and local salient features for transrectal ultrasound image-guided prostate biopsy

Yang, X., Akbari, H., Halig, L. & Fei, B., May 16 2011, Medical Imaging 2011: Visualization, Image-Guided Procedures, and Modeling. 79642V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7964).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

24 Scopus citations

3D segmentation of prostate ultrasound images using wavelet transform

Akbari, H., Yang, X., Halig, L. V. & Fei, B., Jun 9 2011, Medical Imaging 2011: Image Processing. 79622K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7962).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

19 Scopus citations

A MR brain classification method based on multiscale and multiblock fuzzy C-means

Yang, X. & Fei, B., Jul 14 2011, 5th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2011. 5780357. (5th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

A PET/CT directed, 3D ultrasound-guided biopsy system for prostate cancer

Fei, B., Master, V., Nieh, P., Akbari, H., Yang, X., Fenster, A. & Schuster, D., Oct 11 2011, Prostate Cancer Imaging: Image Analysis and Image-Guided Interventions - International Workshop, Held in Conjunction with MICCAI 2011, Proceedings. p. 100-108 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6963 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Automatic 3D segmentation of ultrasound images using atlas registration and statistical texture prior

Yang, X., Schuster, D., Master, V., Nieh, P., Fenster, A. & Fei, B., May 16 2011, Medical Imaging 2011: Visualization, Image-Guided Procedures, and Modeling. 796432. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7964).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

29 Scopus citations

Automatic tissue classification for high-resolution breast CT images based on bilateral filtering

Yang, X., Sechopoulos, I. & Fei, B., Jun 9 2011, Medical Imaging 2011: Image Processing. 79623H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7962).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations
2010

A skull segmentation method for brain MR images based on multiscale bilateral filtering scheme

Yang, X. & Fei, B., Dec 1 2010, Medical Imaging 2010: Image Processing. PART 1 ed. 76233K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7623, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations
2009

A minimal path searching approach for active shape model (ASM)-based segmentation of the lung

Guo, S. & Fei, B., Dec 16 2009, Medical Imaging 2009 - Image Processing. 72594B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7259).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

An MRI-based attenuation correction method for combined PET/MRI applications

Fei, B., Yang, X. & Wang, H., Jun 22 2009, Medical Imaging 2009: Biomedical Applications in Molecular, Structural, and Functional Imaging. 726208. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7262).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

An MRI-guided PET partial volume correction method

Wang, H. & Fei, B., Dec 15 2009, Medical Imaging 2009 - Image Processing. 725928. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7259).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Choline molecular imaging with small-animal PET for monitoring tumor cellular response to photodynamic therapy of cancer

Fei, B., Wang, H., Wu, C., Meyers, J., Xue, L. Y., MacLennan, G. & Schluchter, M., Jun 22 2009, Medical Imaging 2009: Biomedical Applications in Molecular, Structural, and Functional Imaging. 726211. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7262).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Kinematic calibration of a parallel robot for small animal biopsies

Hwang, M. J., Bebek, O., Liang, F., Fei, B. & Cavusoglu, M. C., Dec 11 2009, 2009 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS 2009. p. 4104-4109 6 p. 5353969. (2009 IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations
2008

A deformable model-based minimal path segmentation method for kidney MR images

Li, K. & Fei, B., May 22 2008, Medical Imaging 2008: Image Processing. 69144F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6914).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

A new 3D model-based minimal path segmentation method for kidney MR images

Li, K. & Fei, B., Jan 1 2008, 2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008. IEEE Computer Society, p. 2342-2344 3 p. 4535798. (2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

A robust B-splines-based point match method for non-rigid surface registration

Wang, H. & Fei, B., Jan 1 2008, 2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008. IEEE Computer Society, p. 2353-2356 4 p. 4535801. (2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Design of a small animal biopsy robot

Bebek, O., Hwang, M. J., Fei, B. & Cavusoglu, M. C., Dec 1 2008, Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08. p. 5601-5604 4 p. 4650484. (Proceedings of the 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS'08 - "Personalized Healthcare through Technology").

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Gaussian weighted projection for visualization of cardiac calcification

Chen, X., Li, K., Gilkeson, R. & Fei, B., Jun 23 2008, Medical Imaging 2008 - Visualization, Image-Guided Procedures, and Modeling. 691831. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6918).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2007

Automatic intensity-based 3D-to-2D registration of CT volume and dual-energy digital radiography for the detection of cardiac calcification

Chen, X., Gilkeson, R. & Fei, B., Nov 23 2007, Medical Imaging 2007: Image Processing. PART 1 ed. 65120A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6512, no. PART 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations