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  • 2011

    Reflections on quantitative gamma imaging of cell-surface interactions

    Eberhart, R. C., Dec 1 2011, ASME 2011 Summer Bioengineering Conference, SBC 2011. PARTS A AND B ed. p. 109-110 2 p. (ASME 2011 Summer Bioengineering Conference, SBC 2011; no. PARTS A AND B).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Scatter correction for cone-beam computed tomography using moving blocker strips

    Wang, J., Mao, W. & Solberg, T., May 13 2011, Medical Imaging 2011: Physics of Medical Imaging. 796125. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7961).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • SPATA: A seeding and patching algorithm for de novo transcriptome assembly

    Zhao, Z., Nguyen, T. C., Deng, N., Johnson, K. M. & Zhu, D., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 26-33 8 p. 6112351. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • SPATA: A highly accurate GUI tool for de novo transcriptome assembly

    Nguyen, T. C., Zhao, Z. & Zhu, D., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 1051-1053 3 p. 6112557. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Subcellular particles tracking in time-lapse confocal microscopy images

    Li, S., Luby-Phelps, K., Zhang, B., Wu, X. & Gao, J., 2011, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 5973-5976 4 p. 6091476

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Targeted microbubble-mediated ultrasound therapy: A feasibility study

    Saini, R., Sorace, A. G. & Hoyt, K., Dec 1 2011, 2011 IEEE International Ultrasonics Symposium, IUS 2011. p. 1622-1625 4 p. 6293568. (IEEE International Ultrasonics Symposium, IUS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Texture-based segmentation and analysis of emphysema depicted on CT images

    Tan, J., Zheng, B., Wang, X., Lederman, D., Pu, J., Sciurb, F. C., Gur, D. & Leader, J. K., May 16 2011, Medical Imaging 2011: Biomedical Applications in Molecular, Structural, and Functional Imaging. 79651V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7965).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • The role of magnetic resonance imaging in prostate cancer imaging and staging

    Lenkinski, R. E., Nov 2 2011, 2011 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'11. p. 2109-2112 4 p. 5872829. (Proceedings - International Symposium on Biomedical Imaging).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Toward a simulation and assessment method for the practice of camera-guided rigid bronchoscopy

    Salud, L. H., Peniche, A. R., Salud, J. C., De Hoyos, A. L. & Pugh, C. M., Jan 1 2011, Medicine Meets Virtual Reality 18: NextMed, MMVR18. IOS Press, p. 535-541 7 p. (Studies in Health Technology and Informatics; vol. 163).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    9 Scopus citations
  • Towards validation of robotic surgery training assessment across training platforms

    Gao, Y., Sedef, M., Jog, A., Peng, P., Choti, M., Hager, G., Berkley, J. & Kumar, R., 2011, IROS'11 - 2011 IEEE/RSJ International Conference on Intelligent Robots and Systems: Celebrating 50 Years of Robotics. p. 2539-2544 6 p. 6048437. (IEEE International Conference on Intelligent Robots and Systems).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Transient ST-segment episode detection for ECG beat classification

    Bulusu, S. C., Faezipour, M., Ng, V., Nourani, M., Tamil, L. S. & Banerjee, S., 2011, Proceedings of the 2011 IEEE/NIH Life Science Systems and Applications Workshop, LiSSA 2011. p. 121-124 4 p. 5754171. (Proceedings of the 2011 IEEE/NIH Life Science Systems and Applications Workshop, LiSSA 2011).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    22 Scopus citations
  • Ultrasound elastography using three images

    Rivaz, H., Boctor, E. M., Choti, M. A. & Hager, G. D., 2011, Medical Image Computing and Computer-Assisted Intervention, MICCAI 2011 - 14th International Conference, Proceedings. PART 1 ed. p. 371-378 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6891 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Volumetric contrast-enhanced ultrasound for characterizing tumor vascularity: Preliminary studies in an animal model

    Hoyt, K. & Sorace, A. G., Dec 1 2011, 2011 IEEE International Ultrasonics Symposium, IUS 2011. p. 1292-1295 4 p. 6293598. (IEEE International Ultrasonics Symposium, IUS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • 2010

    4D computed tomography reconstruction from few-projection data via temporal non-local regularization

    Jia, X., Lou, Y., Dong, B., Tian, Z. & Jiang, S., 2010, Medical Image Computing and Computer-Assisted Intervention, MICCAI2010 - 13th International Conference, Proceedings. PART 1 ed. p. 143-150 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6361 LNCS, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    39 Scopus citations
  • A 4d CT sorting algorithm based on image boundary discontinuity

    Yuan, K., Duan, C. & Tian, Z., Sep 2 2010, 2010 International Conference on Medical Image Analysis and Clinical Application, MIACA 2010. p. 147-150 4 p. 5528513. (2010 International Conference on Medical Image Analysis and Clinical Application, MIACA 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Absolute quantification of microrna from human and mouse tissue RNA using highly selective isotachophoretic focusing

    Persat, A., Chivukula, R. R., Mendell, J. T. & Santiago, J. G., Dec 1 2010, 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010. p. 659-661 3 p. (14th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2010, MicroTAS 2010; vol. 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Accurate determination of the shape and location of metal objects in X-ray computed tomography

    Wang, J. & Xing, L., Dec 1 2010, Medical Imaging 2010: Physics of Medical Imaging. PART 3 ed. 76225A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7622, no. PART 3).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Acellular tissue engineering scaffolds for vocal fold regeneration

    Chan, R. W., Sep 6 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010. 5517382. (2010 4th International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • A heterogeneous label propagation algorithm for disease gene discovery

    Hwang, T. & Kuang, R., 2010, Proceedings of the 10th SIAM International Conference on Data Mining, SDM 2010. p. 583-594 12 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    46 Scopus citations
  • A microfluidic assay for metastasis potential analysis

    Rao, S. M. N., Tata, U., Lin, V. K., Hsieh, J. T., Nguyen, K. & Chiao, J. C., Jan 1 2010, Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010. ASME, p. 143-144 2 p. (Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • An implantable batteryless wireless impedance sensor for gastroesophageal reflux diagnosis

    Ativanichayaphong, T., Tang, S. J., Hsu, L. C., Huang, W. D., Seo, Y. S., Tibbals, H. F., Spechler, S. & Chiao, J. C., Oct 15 2010, 2010 IEEE MTT-S International Microwave Symposium, MTT 2010. p. 608-611 4 p. 5516775. (IEEE MTT-S International Microwave Symposium Digest).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    22 Scopus citations
  • An interactive user interface system for Alzheimer's intervention

    Makedon, F., Zhang, R., Alexandrakis, G., Owen, C. B., Huang, H. & Saykin, A. J., Sep 9 2010, 3rd International Conference on PErvasive Technologies Related to Assistive Environments, PETRA 2010. 35. (ACM International Conference Proceeding Series).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • An MRI-compatible three-axis focused ultrasound system for performing drug delivery studies in small animal models

    Waspe, A. C., Chau, A., Kukic, A., Chopra, R. & Hynynen, K., 2010, 9th International Symposium on Therapeutic Ultrasound - ISTU 2009. p. 190-193 4 p. (AIP Conference Proceedings; vol. 1215).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • An MRI-compatible three-axis focused ultrasound system for performing drug delivery studies in small animal models

    Waspe, A. C., Chau, A., Kukic, A., Chopra, R. & Hynynen, K., 2010, Medical Imaging 2010 - Ultrasonic Imaging, Tomography, and Therapy. 76290U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7629).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • A structural-functional MRI-based disease atlas: Application to computer-aided-diagnosis of prostate cancer

    Xiao, G., Bloch, B., Chappelow, J., Genega, E., Rofsky, N., Lenkinski, R. & Madabhushi, A., Dec 1 2010, Medical Imaging 2010: Image Processing. PART 1 ed. 762303. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7623, no. PART 1).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • A study of electrospun polycaprolactone (PCL) fibers for possible bio-absorbable mesh replacement in vaginal surgery

    Manandhar, S., D'Souza, N. & Zimmern, P., Sep 23 2010, 68th Annual Technical Conference of the Society of Plastics Engineers 2010, ANTEC 2010. p. 1316-1318 3 p. (Annual Technical Conference - ANTEC, Conference Proceedings; vol. 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Cbl-phosphatidylinositol 3 kinase interaction differentially regulates macrophage colony-stimulating factor-mediated osteoclast survival and cytoskeletal reorganization

    Adapala, N. S., Barbe, M. F., Langdon, W. Y., Tsygankov, A. Y. & Sanjay, A., Mar 2010, Skeletal Biology and Medicine. Blackwell Publishing Inc., p. 376-384 9 p. (Annals of the New York Academy of Sciences; vol. 1192).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    16 Scopus citations
  • Changes in perfusion related to muscle length affect the pressor response to isometric muscle contraction

    Mizuno, M., Tokizawa, K. & Muraoka, I., Dec 1 2010, Oxygen Transport to Tissue XXXI. Takahashi, E. & Bruley, D. (eds.). p. 371-377 7 p. (Advances in Experimental Medicine and Biology; vol. 662).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Comparing tumor response to VEGF blockade therapy using high frequency ultrasound imaging with size-selected microbubble contrast agents

    Sirsi, S., Borden, M., Chen, C., Hernandez, S., Huang, J., Johung, T., Yamashiro, D., Kandel, J. & Homma, S., 2010, 2010 IEEE International Ultrasonics Symposium, IUS 2010. p. 116-119 4 p. 5935801. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Complete enumeration of compact structural motifs in proteins

    Chitturi, B., Bein, D. & Grishin, N. V., May 3 2010, ISB 2010 Proceedings - International Symposium on Biocomputing. 1722047. (ISB 2010 Proceedings - International Symposium on Biocomputing).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    8 Scopus citations
  • Dealing with difficult deformations: Construction of a knowledge-based deformation atlas

    Thorup, S. S., Darvann, T. A., Hermann, N. V., Larsen, P., Ólafsdóttir, H., Paulsen, R. R., Kane, A. A., Govier, D., Lo, L. J., Kreiborg, S. & Larsen, R., 2010, Medical Imaging 2010 - Biomedical Applications in Molecular, Structural, and Functional Imaging. 76261X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7626).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Demonstration of dual resolution cone beam CT technique with an a-Si/a-Se flat panel detector

    Shen, Y., Zhong, Y., Chen, L., Lai, C. J., Liu, X., Han, T., Yi, Y., You, Z., Ge, S., Wang, T. & Shaw, C. C., Dec 1 2010, Medical Imaging 2010: Physics of Medical Imaging. PART 2 ed. 76223B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7622, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Detection of simulated microcalcifications in digital mammography-effects of quantum and anatomic noises: Preliminary study

    Lai, C. J., Liu, X., You, Z., Shen, Y., Zhong, Y., Chen, L., Han, T., Ge, S., Yi, Y., Geiser, W. R., Flores, D., Whitman, G. J., Yang, W. T. & Shaw, C. C., Dec 1 2010, Medical Imaging 2010: Physics of Medical Imaging. PART 3 ed. 76224Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7622, no. PART 3).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Determination of HER2 amplification status in breast cancer cells using Raman spectroscopy

    Bi, X., Rexer, B., Arteaga, C. L., Guo, M., Li, M. & Mahadevan-Jansen, A., May 7 2010, Biomedical Vibrational Spectroscopy IV: Advances in Research and Industry. 75600C. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7560).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Development of an 8-channel time based readout ASIC for PET applications

    Deng, Z., Lan, A. K., Sun, X., Bircher, C., Liu, Y. & Shao, Y., 2010, IEEE Nuclear Science Symposuim and Medical Imaging Conference, NSS/MIC 2010. p. 1684-1689 6 p. 5874061. (IEEE Nuclear Science Symposium Conference Record).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Dispositions and the infectious disease ontology

    Goldfain, A., Smith, B. & Cowell, L. G., Jan 1 2010, Formal Ontology in Information Systems. IOS Press, p. 400-413 14 p. (Frontiers in Artificial Intelligence and Applications; vol. 209).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    30 Scopus citations
  • Distinguishing different stages of mouse pregnancy using second harmonic generation images

    Yousefi, S., Kehtarnavaz, N., Akins, M., Luby-Phelps, K. & Mahendroo, M., May 24 2010, 2010 42nd Southeastern Symposium on System Theory, SSST 2010. p. 44-46 3 p. 5442801. (Proceedings of the Annual Southeastern Symposium on System Theory).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    6 Scopus citations
  • Distinguishing second harmonic generation images of mouse preterm labor via wavelet-based texture features

    Sobhi-Afshar, A., Kehtarnavaz, N., Akins, M., Luby-Phelps, K. & Mahendroo, M., Nov 8 2010, 2010 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2010 - Proceedings. p. 674-677 4 p. 5495114. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Energy and timing measurement of a PET detector with time-based readout electronics

    Shao, Y., Sun, X., Lan, K. A., Bircher, C., Deng, Z. & Liu, Y., 2010, IEEE Nuclear Science Symposuim and Medical Imaging Conference, NSS/MIC 2010. p. 2504-2509 6 p. 5874238. (IEEE Nuclear Science Symposium Conference Record).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Epidermal growth factor receptor targeting using cetuximab labeledultrasound contrast agents A feasibility study

    Knowles, J., Heath, H., Saini, R., Umphrey, H., Rosenthal, E. & Hoyt, K., Dec 1 2010, 2010 IEEE International Ultrasonics Symposium, IUS 2010. p. 1593-1595 3 p. 5935901. (Proceedings - IEEE Ultrasonics Symposium).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Gadolinium-hydrogel-lipid hybrid nanoparticles provide 'off-on-off' MRI signals for non-invasive thermometry

    Shuhendler, A. J., Gordijo, C. R., Staruch, R., Oakden, W., Stanisz, G., Chopra, R. & Wu, X. Y., Oct 15 2010, Biological Imaging and Sensing Using Nanoparticle Assemblies. p. 66-72 7 p. (Materials Research Society Symposium Proceedings; vol. 1241).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Gold nanoprobes for multi-modality tumor imaging

    Nyagilo, J., Xiao, M., Sun, X. & Davé, D. P., May 10 2010, Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications II. 75760X. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7576).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Histological evaluation of 3D MRI-guided transurethral ultrasound therapy in the prostate

    Vedula, S., Boyes, A., Chopra, R. & Bronskill, M., Mar 30 2010, 9th International Symposium on Therapeutic Ultrasound - ISTU 2009. p. 224-228 5 p. (AIP Conference Proceedings; vol. 1215).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Images registration & superimposition for dual resolution cone beam CT: A preliminary study

    You, Z., Shen, Y., Zhong, Y., Chen, L., Han, T., Ge, S., Yi, Y., Wang, T., Lai, C. J., Liu, X. & Shaw, C. C., Dec 1 2010, Medical Imaging 2010: Physics of Medical Imaging. PART 2 ed. 762234. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7622, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Improving performance and reliability of interactive CAD schemes

    Wang, X. H., Park, S. C., Tan, J., Leader, J. K. & Zheng, B., Jan 1 2010, Medical Imaging 2010: Computer-Aided Diagnosis. SPIE, Vol. 7624. 76242E

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Influence of nanoparticle design on binding efficiency

    Liu, Y., Shah, S., Hu, W. & Gao, J., Aug 4 2010, Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010. p. 265-266 2 p. (Proceedings of the ASME 1st Global Congress on NanoEngineering for Medicine and Biology 2010, NEMB2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Investigation of parameters affecting treatment time in MRI-guided transurethral ultrasound therapy

    N'Djin, W. A., Burtnyk, M., Chopra, R. & Bronskill, M. J., Mar 30 2010, 9th International Symposium on Therapeutic Ultrasound - ISTU 2009. p. 323-326 4 p. (AIP Conference Proceedings; vol. 1215).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • In vivo dual-modality imaging of lymphatic systems using indocyanine green in rats: Three-dimensional photoacoustic imaging and planar fluorescence imaging

    Kim, C., Song, K. H. & Wang, L. V., 2010, Photons Plus Ultrasound: Imaging and Sensing 2010. 75642W. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7564).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Scopus citations
  • Metal artifact reduction in computed tomography by constrained optimization

    Zhang, X., Wang, J. & Xing, L., Dec 1 2010, Medical Imaging 2010: Physics of Medical Imaging. PART 2 ed. 76221T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7622, no. PART 2).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Molecular photoacoustic imaging using gold nanoparticles as a contrast agent

    Kim, C., Cho, E. C., Chen, J., Song, K. H., Au, L., Favazza, C. P., Zhang, Q., Cobley, C. M., Xia, Y. & Wang, L. V., 2010, Photons Plus Ultrasound: Imaging and Sensing 2010. 75641V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7564).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations