University of Texas Southwestern Medical Center

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2020

Advances in biomarker development in acetaminophen toxicity

James, L. P., McGill, M. R., Roberts, D. W., Hinson, J. A. & Lee, W. M., Jan 1 2020, (Accepted/In press) Advances in Clinical Chemistry. Academic Press Inc., (Advances in Clinical Chemistry).

Research output: Chapter in Book/Report/Conference proceedingChapter

Computational deconvolution of tumor-infiltrating immune components with bulk tumor gene expression data

Li, B., Li, T., Liu, J. S. & Liu, X. S., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 249-262 14 p. (Methods in Molecular Biology; vol. 2120).

Research output: Chapter in Book/Report/Conference proceedingChapter

Hyperspectral imaging in medical applications

Fei, B., 2020, Data Handling in Science and Technology. Elsevier Ltd., p. 523-565 43 p. (Data Handling in Science and Technology; vol. 32).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Liver xenotransplantation in a nonhuman primate model

Navarro-Alvarez, N. & Vagefi, P. A., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 197-211 15 p. (Methods in Molecular Biology; vol. 2110).

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular and Functional Imaging in Oncology Therapy Response

Zukotynski, K. A., Kuo, P. H., Kim, C. K. & Subramaniam, R. M., Jan 1 2020, Medical Radiology. Springer, p. 255-272 18 p. (Medical Radiology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Self-Reported Traumatic Brain Injury and Mild Cognitive Impairment: Increased Risk and Earlier Age of Diagnosis

Lobue, C., Denney, D., Hynan, L. S., Rossetti, H. C., Lacritz, L. H., Hart, J., Womack, K. B., Woon, F. L. & Cullum, C. M., Jan 1 2020, Handbook of Traumatic Brain Injury and Neurodegeneration. Castellani, R. J. (ed.). IOS Press, p. 249-258 10 p. (Advances in Alzheimer's Disease; vol. 7).

Research output: Chapter in Book/Report/Conference proceedingChapter

The Multifaceted Effects of Autophagy on the Tumor Microenvironment

Kang, R., Zeh, H., Lotze, M. & Tang, D., Jan 1 2020, Advances in Experimental Medicine and Biology. Springer, p. 99-114 16 p. (Advances in Experimental Medicine and Biology; vol. 1225).

Research output: Chapter in Book/Report/Conference proceedingChapter

The Roles of Cullin-2 E3 Ubiquitin Ligase Complex in Cancer

Liu, X., Zurlo, G. & Zhang, Q., Jan 1 2020, Advances in Experimental Medicine and Biology. Springer, p. 173-186 14 p. (Advances in Experimental Medicine and Biology; vol. 1217).

Research output: Chapter in Book/Report/Conference proceedingChapter

Traumatic Brain Injury and Age of Onset of Dementia with Lewy Bodies

Nguyen, T. P., Schaffert, J., Lobue, C., Womack, K. B., Hart, J. & Cullum, C. M., Jan 1 2020, Handbook of Traumatic Brain Injury and Neurodegeneration. Castellani, R. J. (ed.). IOS Press, p. 219-224 6 p. (Advances in Alzheimer's Disease; vol. 7).

Research output: Chapter in Book/Report/Conference proceedingChapter

Traumatic Brain Injury and Risk of Long-Term Brain Changes, Accumulation of Pathological Markers, and Developing Dementia: A Review

Lobue, C., Munro, C., Schaffert, J., Didehbani, N., Hart, J., Batjer, H. & Munro Cullum, C., Jan 1 2020, Handbook of Traumatic Brain Injury and Neurodegeneration. Castellani, R. J. (ed.). IOS Press, p. 193-218 26 p. (Advances in Alzheimer's Disease; vol. 7).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Adhesins during infection

Krachler, A. M. & Orth, K., Jan 1 2019, Encyclopedia of Microbiology. Elsevier, p. 28-37 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Amino and organic acid analysis: Essential tools in the diagnosis of inborn errors of metabolism

Phipps, W. S., Jones, P. M. & Patel, K. K., Jan 1 2019, Advances in Clinical Chemistry. Academic Press Inc., (Advances in Clinical Chemistry).

Research output: Chapter in Book/Report/Conference proceedingChapter

Atrial Septal Defect

Shafer, K. & Brickner, M. E., Jan 1 2019, Essential Echocardiography: A Companion to Braunwald's Heart Disease. Elsevier, p. 429-434.e1

Research output: Chapter in Book/Report/Conference proceedingChapter

Benign Neoplasms of the Larynx, Hypopharynx, and Trachea

Bishop, J. A., Jan 1 2019, Head and Neck Pathology: A Volume in the Series: Foundations in Diagnostic Pathology. Elsevier, p. 122-137.e2

Research output: Chapter in Book/Report/Conference proceedingChapter

Biology of gender identity and gender incongruence

Hamidi, O. & Nippoldt, T. B., Jan 1 2019, Contemporary Endocrinology. Humana Press Inc., p. 39-50 12 p. (Contemporary Endocrinology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomarker-based treatment selection: A precision medicine approach for depression

Furman, J. L. & Trivedi, M. H., Jan 1 2019, Neurobiology of Depression: Road to Novel Therapeutics. Elsevier, p. 331-340 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

CHAPTER 2: Mechanisms of Antisense Oligonucleotides

Liu, Z. & Corey, D. R., Jan 1 2019, Therapies for Retinal Degeneration: Targeting Common Processes. Agrawal, S. & Gait, M. J. (eds.). 68 ed. Royal Society of Chemistry, p. 22-31 10 p. (RSC Drug Discovery Series; vol. 2019-January, no. 68).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

CT venography

Grewal, S., Sutphin, P. & Kalva, S. P., Jan 1 2019, Medical Radiology. Springer Verlag, p. 855-868 14 p. (Medical Radiology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Embryonic chimeras with human pluripotent stem cells

De Los Angeles, A., Sakurai, M. & Wu, J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 125-151 27 p. (Methods in Molecular Biology; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Enumeration of Plasmacytoid Dendritic Cells in Peripheral Blood and Bone Marrow by Flow-Cytometric Analysis

Alsuwaidan, A., Fuda, F., Chen, W. & Chen, M., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 193-201 9 p. (Methods in Molecular Biology; vol. 2032).

Research output: Chapter in Book/Report/Conference proceedingChapter

Exome sequencing of drug-resistant clones for target identification

Han, T. & Nijhawan, D., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 175-187 13 p. (Methods in Molecular Biology; vol. 1888).

Research output: Chapter in Book/Report/Conference proceedingChapter

Ex Vivo Transposon-Mediated Genetic Screens for Cancer Gene Discovery

O'Donnell-Mendell, K. A., Guo, Y., Suresh, S., Updegraff, B. L. & Zhou, X., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 145-157 13 p. (Methods in Molecular Biology; vol. 1907).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genetic, Environmental, and Nuclear Factors Governing Genomic Rearrangements

Ramanand, S. G. & Mani, R. S., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer, p. 57-66 10 p. (Advances in Experimental Medicine and Biology; vol. 1210).

Research output: Chapter in Book/Report/Conference proceedingChapter

Glomerular diseases associated with Hepatitis B and C infection, pediatric

Brown, E., Feb 26 2019, Glomerulonephritis. Springer International Publishing, p. 499-507 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hematopoietic cell transplantation for chronic lymphocytic leukemia

Awan, F. T. & Kharfan-Dabaja, M. A., Jan 1 2019, Hematopoietic Cell Transplantation for Malignant Conditions. Elsevier, p. 185-190 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Highly efficient derivation of pluripotent stem cells from mouse preimplantation and postimplantation embryos in serum-free conditions

De Los Angeles, A., Okamura, D. & Wu, J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 29-36 8 p. (Methods in Molecular Biology; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingChapter

Hypoxia mediates tumor malignancy and therapy resistance

Luo, W. & Wang, Y., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 1-18 18 p. (Advances in Experimental Medicine and Biology; vol. 1136).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Identification of Protein Homologs and Domain Boundaries by Iterative Sequence Alignment

Schaeffer, D. & Grishin, N. V., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 277-286 10 p. (Methods in Molecular Biology; vol. 1851).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunotoxins: A new approach to cancer therapy

Vitetta, E. S., Krolick, K. A., Miyama-Inaban, M., Cushley, W. & Uhr, J. W., Jan 1 2019, Biotechnology and Biological Frontiers. Taylor and Francis, p. 73-85 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Isotopic Labeling of Eukaryotic Membrane Proteins for NMR Studies of Interactions and Dynamics

Dikiy, I., Clark, L. D., Gardner, K. H. & Rosenbaum, D. M., Jan 1 2019, Methods in Enzymology. Wand, A. J. (ed.). Academic Press Inc., p. 37-65 29 p. (Methods in Enzymology; vol. 614).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Malignant Neoplasms of the Nasal Cavity, Paranasal Sinuses, and Nasopharynx

Bishop, J. A. & Thompson, L. D. R., Jan 1 2019, Head and Neck Pathology: A Volume in the Series: Foundations in Diagnostic Pathology. Elsevier, p. 51-100.e6

Research output: Chapter in Book/Report/Conference proceedingChapter

Manipulation of renal gene expression using oligonucleotides

Lakhia, R., Mishra, A. & Patel, V., 2019, Methods in Cell Biology. Weimbs, T. (ed.). Academic Press Inc., p. 109-120 12 p. (Methods in Cell Biology; vol. 154).

Research output: Chapter in Book/Report/Conference proceedingChapter

Metallothionein-human gh fusion genes stimulate growth of mice

Palmiter, R. D., Norstedt, G., Gelinas, R. E., Hammer, R. E. & Brinster, R. L., Jan 1 2019, Biotechnology and Biological Frontiers. Taylor and Francis, p. 468-479 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Methods for renal lineage tracing: In vivo and beyond

Drake, K. A., Fessler, A. R. & Carroll, T. J., 2019, Methods in Cell Biology. Weimbs, T. (ed.). Academic Press Inc., p. 121-143 23 p. (Methods in Cell Biology; vol. 154).

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular prognosis in liver cirrhosis

Athuluri-Divakar, S. K. & Hoshida, Y., Jan 1 2019, Genomic and Precision Medicine: Infectious and Inflammatory Disease. Elsevier, p. 413-427 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mouse models to study natural killer cell-mediated immunosurveillance and metastatic latency

Nair, V. R. & Malladi, S., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 141-150 10 p. (Methods in Molecular Biology; vol. 1884).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Non-Neoplastic Lesions of the Nasal Cavity, Paranasal Sinuses, and Nasopharynx

McCuiston, A. & Bishop, J. A., Jan 1 2019, Head and Neck Pathology: A Volume in the Series: Foundations in Diagnostic Pathology. Elsevier, p. 1-21.e2

Research output: Chapter in Book/Report/Conference proceedingChapter

Nuclear foci assays in live cells

Mori, E. & Aroumougame, A., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 75-85 11 p. (Methods in Molecular Biology; vol. 1984).

Research output: Chapter in Book/Report/Conference proceedingChapter

Other Common Congenital Defects in Adults

Shafer, K. & Brickner, M. E., Jan 1 2019, Essential Echocardiography: A Companion to Braunwald's Heart Disease. Elsevier, p. 440-446.e1

Research output: Chapter in Book/Report/Conference proceedingChapter

Perioperative Blood Conservation: Guidelines to Practice

Kwak, J., Wilkey, A. L., Abdalla, M., Joshi, R., Roman, P. E. F. & Greilich, P. E., Dec 2019, Advances in Anesthesia. McLoughlin, T. M., Dutton, R. P., Salinas, F. V. & Torsher, L. C. (eds.). Academic Press Inc., p. 1-34 34 p. (Advances in Anesthesia; vol. 37).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pharmacogenomics and Biomarkers of Depression

Jha, M. K. & Trivedi, M. H., Jan 1 2019, Handbook of Experimental Pharmacology. Springer New York LLC, p. 101-113 13 p. (Handbook of Experimental Pharmacology; vol. 250).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

Pig chimeric model with human pluripotent stem cells

Zhong, C., Wu, J. & Izpisua Belmonte, J. C., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 101-124 24 p. (Methods in Molecular Biology; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingChapter

Serial multiphoton tomography and analysis of volumetric images of the mouse brain

Ramirez, D. M. O., Ajay, A. D., Goldberg, M. P. & Meeks, J. P., Jan 1 2019, Neuromethods. Humana Press Inc., p. 195-224 30 p. (Neuromethods; vol. 148).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Single-cell RNA-sequencing of peripheral blood mononuclear cells with ddSEQ

Khan, S. & Kaihara, K. A., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 155-176 22 p. (Methods in Molecular Biology; vol. 1979).

Research output: Chapter in Book/Report/Conference proceedingChapter

Site-specific analysis of the Asp- and Glu-ADP-ribosylated proteome by quantitative mass spectrometry

Li, P., Zhen, Y. & Yu, Y., Jan 1 2019, Methods in Enzymology. Academic Press Inc., (Methods in Enzymology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Small Molecule-Based Inducible Gene Therapies for Retinal Degeneration

Datta, S., Peng, H. & Hulleman, J. D., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer, p. 65-69 5 p. (Advances in Experimental Medicine and Biology; vol. 1185).

Research output: Chapter in Book/Report/Conference proceedingChapter

Structural and Biochemical Analyses of the Core Components of the Hippo Pathway

Ni, L. & Luo, X., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 239-256 18 p. (Methods in Molecular Biology; vol. 1893).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

The Flavone Baicalein and Its Use in Gastrointestinal Disease

Xie, Y., Kang, R. & Tang, D., Jan 16 2019, Dietary Interventions in Liver Disease: Foods, Nutrients, and Dietary Supplements. Elsevier, p. 145-155 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ventricular Septal Defect

Shafer, K. & Brickner, M. E., Jan 1 2019, Essential Echocardiography: A Companion to Braunwald's Heart Disease. Elsevier, p. 435-439.e1

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Acute vision loss

Long, B. & Koyfman, A., Jun 21 2018, Handbook of Emergency Ophthalmology. Springer International Publishing, p. 135-152 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter