2-Pyrrolidinone and succinimide as clinical screening biomarkers for gaba-transaminase deficiency

Anti-seizure medications impact accurate diagnosis

Adam D. Kennedy, Kirk L. Pappan, Taraka Donti, Mauricio R Delgado-Ayala, Marwan Shinawi, Toni S. Pearson, Seema R. Lalani, William E. Craigen, V. Reid Sutton, Anne M. Evans, Qin Sun, Lisa T. Emrick, Sarah H. Elsea

Research output: Contribution to journalArticle

Abstract

Broad-scale untargeted biochemical phenotyping is a technology that supplements widely accepted assays, such as organic acid, amino acid, and acylcarnitine analyses typically utilized for the diagnosis of inborn errors of metabolism. In this study, we investigate the analyte changes associated with 4-aminobutyrate aminotransferase (ABAT, GABA transaminase) deficiency and treatments that affect GABA metabolism. GABA-transaminase deficiency is a rare neurodevelopmental and neurometabolic disorder caused by mutations in ABAT and resulting in accumulation of GABA in the cerebrospinal fluid (CSF). For that reason, measurement of GABA in CSF is currently the primary approach to diagnosis. GABA-transaminase deficiency results in severe developmental delay with intellectual disability, seizures, and movement disorder, and is often associated with death in childhood. Using an untargeted metabolomics platform, we analyzed EDTA plasma, urine, and CSF specimens from four individuals with GABA-transaminase deficiency to identify biomarkers by comparing the biochemical profile of individual patient samples to a pediatric-centric population cohort. Metabolomic analyses of over 1,000 clinical plasma samples revealed a rich source of biochemical information. Three out of four patients showed significantly elevated levels of the molecule 2-pyrrolidinone (Z-score ≥2) in plasma, and whole exome sequencing revealed variants of uncertain significance in ABAT. Additionally, these same patients also had elevated levels of succinimide in plasma, urine, and CSF and/or homocarnosine in urine and CSF. In the analysis of clinical EDTA plasma samples, the levels of succinimide and 2-pyrrolidinone showed a high level of correlation (R = 0.73), indicating impairment in GABA metabolism and further supporting the association with GABA-transaminase deficiency and the pathogenicity of the ABAT variants. Further analysis of metabolomic data across our patient population revealed the association of elevated levels of 2-pyrrolidinone with administration of vigabatrin, a commonly used anti-seizure medication and a known inhibitor of GABA-transaminase. These data indicate that anti-seizure medications may alter the biochemical and metabolomic data, potentially impacting the interpretation and diagnosis for the patient. Further, these data demonstrate the power of combining broad scale genotyping and phenotyping technologies to diagnose inherited neurometabolic disorders and support the use of metabolic phenotyping of plasma to screen for GABA-transaminase deficiency.

Original languageEnglish (US)
Article number394
JournalFrontiers in Neuroscience
Volume13
Issue numberMAY
DOIs
StatePublished - Jan 1 2019

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Post-Traumatic Epilepsy
Metabolomics
Biomarkers
Cerebrospinal Fluid
gamma-Aminobutyric Acid
4-Aminobutyrate Transaminase
Urine
Edetic Acid
Seizures
Vigabatrin
Exome
Technology
Inborn Errors Metabolism
Movement Disorders
Intellectual Disability
Population
Virulence
Gamma aminobutyric acid transaminase deficiency
2-pyrrolidone
succinimide

Keywords

  • 2-pyrrolidinone
  • 4-aminobutyrate aminotransferase deficiency
  • Gaba
  • Gaba-transaminase deficiency
  • Inborn error of metabolism
  • Neurometabolic
  • Neurotransmitter
  • Vigabatrin

ASJC Scopus subject areas

  • Neuroscience(all)

Cite this

2-Pyrrolidinone and succinimide as clinical screening biomarkers for gaba-transaminase deficiency : Anti-seizure medications impact accurate diagnosis. / Kennedy, Adam D.; Pappan, Kirk L.; Donti, Taraka; Delgado-Ayala, Mauricio R; Shinawi, Marwan; Pearson, Toni S.; Lalani, Seema R.; Craigen, William E.; Sutton, V. Reid; Evans, Anne M.; Sun, Qin; Emrick, Lisa T.; Elsea, Sarah H.

In: Frontiers in Neuroscience, Vol. 13, No. MAY, 394, 01.01.2019.

Research output: Contribution to journalArticle

Kennedy, AD, Pappan, KL, Donti, T, Delgado-Ayala, MR, Shinawi, M, Pearson, TS, Lalani, SR, Craigen, WE, Sutton, VR, Evans, AM, Sun, Q, Emrick, LT & Elsea, SH 2019, '2-Pyrrolidinone and succinimide as clinical screening biomarkers for gaba-transaminase deficiency: Anti-seizure medications impact accurate diagnosis', Frontiers in Neuroscience, vol. 13, no. MAY, 394. https://doi.org/10.3389/fnins.2019.00394
Kennedy, Adam D. ; Pappan, Kirk L. ; Donti, Taraka ; Delgado-Ayala, Mauricio R ; Shinawi, Marwan ; Pearson, Toni S. ; Lalani, Seema R. ; Craigen, William E. ; Sutton, V. Reid ; Evans, Anne M. ; Sun, Qin ; Emrick, Lisa T. ; Elsea, Sarah H. / 2-Pyrrolidinone and succinimide as clinical screening biomarkers for gaba-transaminase deficiency : Anti-seizure medications impact accurate diagnosis. In: Frontiers in Neuroscience. 2019 ; Vol. 13, No. MAY.
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T2 - Anti-seizure medications impact accurate diagnosis

AU - Kennedy, Adam D.

AU - Pappan, Kirk L.

AU - Donti, Taraka

AU - Delgado-Ayala, Mauricio R

AU - Shinawi, Marwan

AU - Pearson, Toni S.

AU - Lalani, Seema R.

AU - Craigen, William E.

AU - Sutton, V. Reid

AU - Evans, Anne M.

AU - Sun, Qin

AU - Emrick, Lisa T.

AU - Elsea, Sarah H.

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N2 - Broad-scale untargeted biochemical phenotyping is a technology that supplements widely accepted assays, such as organic acid, amino acid, and acylcarnitine analyses typically utilized for the diagnosis of inborn errors of metabolism. In this study, we investigate the analyte changes associated with 4-aminobutyrate aminotransferase (ABAT, GABA transaminase) deficiency and treatments that affect GABA metabolism. GABA-transaminase deficiency is a rare neurodevelopmental and neurometabolic disorder caused by mutations in ABAT and resulting in accumulation of GABA in the cerebrospinal fluid (CSF). For that reason, measurement of GABA in CSF is currently the primary approach to diagnosis. GABA-transaminase deficiency results in severe developmental delay with intellectual disability, seizures, and movement disorder, and is often associated with death in childhood. Using an untargeted metabolomics platform, we analyzed EDTA plasma, urine, and CSF specimens from four individuals with GABA-transaminase deficiency to identify biomarkers by comparing the biochemical profile of individual patient samples to a pediatric-centric population cohort. Metabolomic analyses of over 1,000 clinical plasma samples revealed a rich source of biochemical information. Three out of four patients showed significantly elevated levels of the molecule 2-pyrrolidinone (Z-score ≥2) in plasma, and whole exome sequencing revealed variants of uncertain significance in ABAT. Additionally, these same patients also had elevated levels of succinimide in plasma, urine, and CSF and/or homocarnosine in urine and CSF. In the analysis of clinical EDTA plasma samples, the levels of succinimide and 2-pyrrolidinone showed a high level of correlation (R = 0.73), indicating impairment in GABA metabolism and further supporting the association with GABA-transaminase deficiency and the pathogenicity of the ABAT variants. Further analysis of metabolomic data across our patient population revealed the association of elevated levels of 2-pyrrolidinone with administration of vigabatrin, a commonly used anti-seizure medication and a known inhibitor of GABA-transaminase. These data indicate that anti-seizure medications may alter the biochemical and metabolomic data, potentially impacting the interpretation and diagnosis for the patient. Further, these data demonstrate the power of combining broad scale genotyping and phenotyping technologies to diagnose inherited neurometabolic disorders and support the use of metabolic phenotyping of plasma to screen for GABA-transaminase deficiency.

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