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2019

Generic chemoprevention of hepatocellular carcinoma

Athuluri-Divakar, S. K. & Hoshida, Y., Mar 2019, In : Annals of the New York Academy of Sciences. 1440, 1, p. 23-35 13 p.

Research output: Contribution to journalReview article

1 Scopus citations

Gene signature-MELD score and alcohol relapse determine long-term prognosis of patients with severe alcoholic hepatitis

Deltenre, P., Trépo, E., Fujiwara, N., Goossens, N., Marot, A., Dubois, M., Spahr, L., Henrion, J., Moreno, C. & Hoshida, Y., Jan 1 2019, (Accepted/In press) In : Liver International.

Research output: Contribution to journalArticle

2 Scopus citations

Genetic, Environmental, and Nuclear Factors Governing Genomic Rearrangements

Ramanand, S. G. & Mani, R. S., Jan 1 2019, Advances in Experimental Medicine and Biology. Springer, p. 57-66 10 p. (Advances in Experimental Medicine and Biology; vol. 1210).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genetic analysis of activity, brain and behavioral associations in extended families with heavy genetic loading for bipolar disorder

Vreeker, A., Fears, S. C., Service, S. K., Pagani, L., Takahashi, J. S., Araya, C., Araya, X., Bejarano, J., Lopez, M. C., Montoya, G., Montoya, C. P., Teshiba, T. M., Escobar, J., Cantor, R. M., López-Jaramillo, C., MacAya, G., Molina, J., Reus, V. I., Sabatti, C., Ophoff, R. A. & 2 others, Freimer, N. B. & Bearden, C. E., Jan 1 2019, (Accepted/In press) In : Psychological Medicine.

Research output: Contribution to journalArticle

Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis

UK NIHR BioResource Rare Diseases Consortium, UK PAH Cohort Study Consortium & US PAH Biobank Consortium, Mar 2019, In : The Lancet Respiratory Medicine. 7, 3, p. 227-238 12 p.

Research output: Contribution to journalArticle

Open Access
14 Scopus citations

Genetic heterogeneity within collective invasion packs drives leader and follower cell phenotypes

Zoeller, E. L., Pedro, B., Konen, J., Dwivedi, B., Rupji, M., Sundararaman, N., Wang, L., Horton, J. R., Zhong, C., Barwick, B. G., Cheng, X., Martinez, E. D., Torres, M. P., Kowalski, J., Marcus, A. I. & Vertino, P. M., Oct 9 2019, In : Journal of cell science. 132, 19

Research output: Contribution to journalArticle

Open Access

Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing

Alzheimer Disease Genetics Consortium (ADGC), The European Alzheimer’s Disease Initiative (EADI), Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium (CHARGE), & Genetic and Environmental Risk in AD/Defining Genetic, Polygenic and Environmental Risk for Alzheimer’s Disease Consortium (GERAD/PERADES), Mar 1 2019, In : Nature genetics. 51, 3, p. 414-430 17 p.

Research output: Contribution to journalArticle

119 Scopus citations

Genetic profiling of fatty acid desaturase polymorphisms identifies patients who may benefit from high-dose omega-3 fatty acids in cardiac remodeling after acute myocardial infarction—Post-hoc analysis from the OMEGA-REMODEL randomized controlled trial

Kwong, R. Y., Heydari, B., Ge, Y., Abdullah, S., Fujikura, K., Kaneko, K., Harris, W. S., Jerosch-Herold, M., Antman, E. M., Seidman, J. G. & Pfeffer, M. A., Jan 1 2019, In : PloS one. 14, 9, e0222061.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Genetics of testicular germ cell tumors

Singla, N., Lafin, J. T., Ghandour, R. A., Kaffenberger, S., Amatruda, J. F. & Bagrodia, A., Jul 1 2019, In : Current opinion in urology. 29, 4, p. 344-349 6 p.

Research output: Contribution to journalArticle

Genetic Variants Associated With Vincristine-Induced Peripheral Neuropathy in Two Populations of Children With Acute Lymphoblastic Leukemia

Li, L., Sajdyk, T., Smith, E. M. L., Chang, C. W., Li, C., Ho, R. H., Hutchinson, R., Wells, E., Skiles, J. L., Winick, N. J., Martin, P. L. & Renbarger, J. L., Jan 1 2019, (Accepted/In press) In : Clinical Pharmacology and Therapeutics.

Research output: Contribution to journalArticle

3 Scopus citations

Genitourinary Surgical Workload at Deployed U.S. Facilities in Iraq and Afghanistan, 2002-2016

Turner, C. A., Orman, J. A., Stockinger, Z. T. & Hudak, S. J., Jan 1 2019, In : Military Medicine. 184, 1-2, p. E179-E185

Research output: Contribution to journalArticle

Genomes of skipper butterflies reveal extensive convergence of wing patterns

Li, W., Cong, Q., Shen, J., Zhang, J., Hallwachs, W., Janzen, D. H. & Grishin, N. V., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 13, p. 6232-6237 6 p.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations

Genomes reveal drastic and recurrent phenotypic divergence in firetip skipper butterflies (Hesperiidae: Pyrrhopyginae)

Zhang, J., Cong, Q., Shen, J., Brockmann, E. & Grishin, N. V., May 29 2019, In : Proceedings of the Royal Society B: Biological Sciences. 286, 1903, 20190609.

Research output: Contribution to journalArticle

4 Scopus citations

Genome-wide analyses as part of the international FTLD-TDP whole-genome sequencing consortium reveals novel disease risk factors and increases support for immune dysfunction in FTLD

Pottier, C., Ren, Y., Perkerson, R. B., Baker, M., Jenkins, G. D., van Blitterswijk, M., DeJesus-Hernandez, M., van Rooij, J. G. J., Murray, M. E., Christopher, E., McDonnell, S. K., Fogarty, Z., Batzler, A., Tian, S., Vicente, C. T., Matchett, B., Karydas, A. M., Hsiung, G. Y. R., Seelaar, H., Mol, M. O. & 85 others, Finger, E. C., Graff, C., Öijerstedt, L., Neumann, M., Heutink, P., Synofzik, M., Wilke, C., Prudlo, J., Rizzu, P., Simon-Sanchez, J., Edbauer, D., Roeber, S., Diehl-Schmid, J., Evers, B. M., King, A., Mesulam, M. M., Weintraub, S., Geula, C., Bieniek, K. F., Petrucelli, L., Ahern, G. L., Reiman, E. M., Woodruff, B. K., Caselli, R. J., Huey, E. D., Farlow, M. R., Grafman, J., Mead, S., Grinberg, L. T., Spina, S., Grossman, M., Irwin, D. J., Lee, E. B., Suh, E. R., Snowden, J., Mann, D., Ertekin-Taner, N., Uitti, R. J., Wszolek, Z. K., Josephs, K. A., Parisi, J. E., Knopman, D. S., Petersen, R. C., Hodges, J. R., Piguet, O., Geier, E. G., Yokoyama, J. S., Rissman, R. A., Rogaeva, E., Keith, J., Zinman, L., Tartaglia, M. C., Cairns, N. J., Cruchaga, C., Ghetti, B., Kofler, J., Lopez, O. L., Beach, T. G., Arzberger, T., Herms, J., Honig, L. S., Vonsattel, J. P., Halliday, G. M., Kwok, J. B., White, C. L., Gearing, M., Glass, J., Rollinson, S., Pickering-Brown, S., Rohrer, J. D., Trojanowski, J. Q., Van Deerlin, V., Bigio, E. H., Troakes, C., Al-Sarraj, S., Asmann, Y., Miller, B. L., Graff-Radford, N. R., Boeve, B. F., Seeley, W. W., Mackenzie, I. R. A., van Swieten, J. C., Dickson, D. W., Biernacka, J. M. & Rademakers, R., Jun 1 2019, In : Acta Neuropathologica. 137, 6, p. 879-899 21 p.

Research output: Contribution to journalArticle

11 Scopus citations

Genome-Wide Analysis of Glioblastoma Patients with Unexpectedly Long Survival

Richardson, T. E., Patel, S., Serrano, J., Sathe, A. A., Daoud, E. V., Oliver, D. H., Maher, E. A., Madrigales, A., Mickey, B. E., Taxter, T., Jour, G., White, C. L., Raisanen, J. M., Xing, C., Snuderl, M. & Hatanpaa, K. J., Jun 1 2019, In : Journal of neuropathology and experimental neurology. 78, 6, p. 501-507 7 p.

Research output: Contribution to journalArticle

2 Scopus citations

Genome-wide association analysis of hippocampal volume identifies enrichment of neurogenesis-related pathways

Alzheimer’S Disease Neuroimaging Initiative (Adni), Dec 1 2019, In : Scientific reports. 9, 1, 14498.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Genome-Wide Association Study of Susceptibility Loci for T-Cell Acute Lymphoblastic Leukemia in Children

Qian, M., Zhao, X., Devidas, M., Yang, W., Gocho, Y., Smith, C., Gastier-Foster, J. M., Li, Y., Xu, H., Zhang, S., Jeha, S., Zhai, X., Sanda, T., Winter, S. S., Dunsmore, K. P., Raetz, E. A., Carroll, W. L., Winick, N. J., Rabin, K. R., Zweidler-Mckay, P. A. & 8 others, Wood, B., Pui, C. H., Evans, W. E., Hunger, S. P., Mullighan, C. G., Relling, M. V., Loh, M. L. & Yang, J. J., Dec 1 2019, In : Journal of the National Cancer Institute. 111, 12, p. 1350-1357 8 p.

Research output: Contribution to journalArticle

Genome-wide cell-free DNA fragmentation in patients with cancer

Cristiano, S., Leal, A., Phallen, J., Fiksel, J., Adleff, V., Bruhm, D. C., Jensen, S. Ø., Medina, J. E., Hruban, C., White, J. R., Palsgrove, D. N., Niknafs, N., Anagnostou, V., Forde, P., Naidoo, J., Marrone, K., Brahmer, J., Woodward, B. D., Husain, H., van Rooijen, K. L. & 16 others, Ørntoft, M. B. W., Madsen, A. H., van de Velde, C. J. H., Verheij, M., Cats, A., Punt, C. J. A., Vink, G. R., van Grieken, N. C. T., Koopman, M., Fijneman, R. J. A., Johansen, J. S., Nielsen, H. J., Meijer, G. A., Andersen, C. L., Scharpf, R. B. & Velculescu, V. E., Jun 20 2019, In : Nature. 570, 7761, p. 385-389 5 p.

Research output: Contribution to journalArticle

45 Scopus citations

Genome-wide differential expression profiling of lncRNAs and mRNAs associated with early diabetic cardiomyopathy

Pant, T., Dhanasekaran, A., Bai, X., Zhao, M., Thorp, E. B., Forbess, J. M., Bosnjak, Z. J. & Ge, Z. D., Dec 1 2019, In : Scientific reports. 9, 1, 15345.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Genome-wide DNA methylation analysis in ankylosing spondylitis identifies HLA-B*27 dependent and independent DNA methylation changes in whole blood

Coit, P., Kaushik, P., Caplan, L., Kerr, G. S., Walsh, J. A., Dubreuil, M., Reimold, A. & Sawalha, A. H., Aug 2019, In : Journal of Autoimmunity. 102, p. 126-132 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Genome-wide germline correlates of the epigenetic landscape of prostate cancer

Houlahan, K. E., Shiah, Y. J., Gusev, A., Yuan, J., Ahmed, M., Shetty, A., Ramanand, S. G., Yao, C. Q., Bell, C., O’Connor, E., Huang, V., Fraser, M., Heisler, L. E., Livingstone, J., Yamaguchi, T. N., Rouette, A., Foucal, A., Espiritu, S. M. G., Sinha, A., Sam, M. & 23 others, Timms, L., Johns, J., Wong, A., Murison, A., Orain, M., Picard, V., Hovington, H., Bergeron, A., Lacombe, L., Lupien, M., Fradet, Y., Têtu, B., McPherson, J. D., Pasaniuc, B., Kislinger, T., Chua, M. L. K., Pomerantz, M. M., van der Kwast, T., Freedman, M. L., Mani, R. S., He, H. H., Bristow, R. G. & Boutros, P. C., Oct 1 2019, In : Nature medicine. 25, 10, p. 1615-1626 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Genomic analysis demonstrates that histologically-defined astroblastomas are molecularly heterogeneous and that tumors with MN1 rearrangement exhibit the most favorable prognosis

Lehman, N. L., Usubalieva, A., Lin, T., Allen, S. J., Tran, Q. T., Mobley, B. C., McLendon, R. E., Schniederjan, M. J., Georgescu, M. M., Couce, M., Dulai, M. S., Raisanen, J. M., Al Abbadi, M., Palmer, C. A., Hattab, E. M. & Orr, B. A., Mar 15 2019, In : Acta neuropathologica communications. 7, 1, 1 p.

Research output: Contribution to journalArticle

Open Access

Genomic analysis of the tribe Emesidini (Lepidoptera: Riodinidae)

Zhang, J., Shen, J., Cong, Q. & Grishin, N. V., Sep 12 2019, In : Zootaxa. 4668, 4, p. 475-488 14 p.

Research output: Contribution to journalArticle

Open Access

Genomic Landscape of Intramedullary Spinal Cord Gliomas

Zhang, M., Iyer, R. R., Azad, T. D., Wang, Q., Garzon-Muvdi, T., Wang, J., Liu, A., Burger, P., Eberhart, C., Rodriguez, F. J., Sciubba, D. M., Wolinsky, J. P., Gokaslan, Z., Groves, M. L., Jallo, G. I. & Bettegowda, C., Dec 1 2019, In : Scientific reports. 9, 1, 18722.

Research output: Contribution to journalArticle

Open Access

Genomic landscape of neutrophilic leukemias of ambiguous diagnosis

Zhang, H., Wilmot, B., Bottomly, D., Dao, K. H. T., Stevens, E., Eide, C. A., Khanna, V., Rofelty, A., Savage, S., Schultz, A. R., Long, N., White, L., Carlos, A., Henson, R., Lin, C., Searles, R., Collins, R. H., DeAngelo, D. J., Deininger, M. W., Dunn, T. & 12 others, Hein, T., Luskin, M. R., Medeiros, B. C., Oh, S. T., Pollyea, D. A., Steensma, D. P., Stone, R. M., Druker, B. J., McWeeney, S. K., Maxson, J. E., Gotlib, J. R. & Tyner, J. W., Sep 12 2019, In : Blood. 134, 11, p. 867-879 13 p.

Research output: Contribution to journalArticle

7 Scopus citations

Genomics of circadian rhythms in health and disease

Rijo-Ferreira, F. & Takahashi, J. S., Dec 17 2019, In : Genome Medicine. 11, 1, 82.

Research output: Contribution to journalReview article

Open Access
2 Scopus citations

Genomic testing in pediatric epilepsy

Thodeson, D. M. & Park, J. Y., Jan 1 2019, In : Cold Spring Harbor Molecular Case Studies. 5, 4

Research output: Contribution to journalReview article

Open Access

Geographic tongue induced by venetoclax in a patient with chronic lymphocytic leukemia

Krispinsky, A. J., Rzepka, P. V., Awan, F. & Kaffenberger, B. H., Jan 1 2019, In : Journal of Clinical and Aesthetic Dermatology. 12, 5, 1 p.

Research output: Contribution to journalLetter

Geriatric Psychiatry Inpatient Primer for Residents

Thomas, N. A., Van Enkevort, E., Garrett, R. K. & Camp, M. M. E., Jan 1 2019, In : Academic Psychiatry.

Research output: Contribution to journalArticle

Getting a grip on adhesion: Cadherin switching and collagen signaling

Huang, H., Wright, S., Zhang, J. & Brekken, R. A., Jan 1 2019, In : Biochimica et Biophysica Acta - Molecular Cell Research.

Research output: Contribution to journalReview article

4 Scopus citations

Ghrelin's Relationship to Blood Glucose

Mani, B. K., Shankar, K. & Zigman, J. M., May 1 2019, In : Endocrinology. 160, 5, p. 1247-1261 15 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Giant congenital melanocytic nevus treated with trametinib

Mir, A., Agim, N. G., Kane, A. A., Josephs, S. C., Park, J. Y. & Ludwig, K., Mar 2019, In : Pediatrics. 143, 3, e20182469.

Research output: Contribution to journalArticle

2 Scopus citations

GIGSEA: Genotype imputed gene set enrichment analysis using GWAS summary level data

Zhu, S., Qian, T., Hoshida, Y., Shen, Y., Yu, J. & Hao, K., Jan 1 2019, In : Bioinformatics. 35, 1, p. 160-163 4 p.

Research output: Contribution to journalArticle

2 Scopus citations

GLI1-amplifications expand the spectrum of soft tissue neoplasms defined by GLI1 gene fusions

Agaram, N. P., Zhang, L., Sung, Y. S., Singer, S., Stevens, T., Prieto-Granada, C. N., Bishop, J. A., Wood, B. A., Swanson, D., Dickson, B. C. & Antonescu, C. R., Jan 1 2019, In : Modern Pathology.

Research output: Contribution to journalArticle

5 Scopus citations

Glial Cell Line–Derived Neurotrophic Factor and Chondroitinase Promote Axonal Regeneration in a Chronic Denervation Animal Model

Sarhane, K. A., Tuffaha, S. H., Ibrahim, Z., Cashman, C. R., Krick, K., Martin, R., Broyles, J. M., Cooney, D. S., Lee, W. P. A., Mi, R., Mao, H. Q., Höke, A. & Brandacher, G., Oct 1 2019, In : Neurotherapeutics. 16, 4, p. 1283-1295 13 p.

Research output: Contribution to journalArticle

Glial cells maintain synapses by inhibiting an activity-dependent retrograde protease signal

Gould, T. W., Dominguez, B., De Winter, F., Yeo, G. W., Liu, P., Sundararaman, B., Stark, T., Vu, A., Degen, J. L., Lin, W. & Lee, K. F., Mar 2019, In : PLoS genetics. 15, 3, e1007948.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Global Analysis of Enhancer Targets Reveals Convergent Enhancer-Driven Regulatory Modules

Xie, S., Armendariz, D., Zhou, P., Duan, J. & Hon, G. C., Nov 26 2019, In : Cell Reports. 29, 9, p. 2570-2578.e5

Research output: Contribution to journalArticle

Open Access

Global analysis of protein expression in muscle tissues of dermatomyositis/polymyosisits patients demonstrated an association between dysferlin and human leucocyte antigen A

Xiao, Y., Zhu, H., Li, L., Gao, S., Liu, D., Dai, B., Li, Q., Duan, H., Yang, H., Li, Q., Zhang, H., Luo, H. & Zuo, X., Aug 1 2019, In : Rheumatology (United Kingdom). 58, 8, p. 1474-1484 11 p.

Research output: Contribution to journalArticle

2 Scopus citations

Global Initiative for Children’s Surgery: A Model of Global Collaboration to Advance the Surgical Care of Children

Global Initiative for Children’s Surgery, Jun 15 2019, In : World Journal of Surgery. 43, 6, p. 1416-1425 10 p.

Research output: Contribution to journalArticle

Open Access
14 Scopus citations

Global Vascular Guidelines on the Management of Chronic Limb-Threatening Ischemia

GVG Writing Group for the Joint Guidelines of the Society for Vascular Surgery (SVS), European Society for Vascular Surgery (ESVS), and World Federation of Vascular Societies (WFVS), Jul 2019, In : European Journal of Vascular and Endovascular Surgery. 58, 1, p. S1-S109.e33

Research output: Contribution to journalArticle

Open Access
48 Scopus citations

Glomerular diseases associated with Hepatitis B and C infection, pediatric

Brown, E., Feb 26 2019, Glomerulonephritis. Springer International Publishing, p. 499-507 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Glomerular Filtration Rate and Associated Risks of Cardiovascular Events, Mortality, and Severe Hypoglycemia in Patients with Type 2 Diabetes: Secondary Analysis (DEVOTE 11)

Amod, A., Buse, J. B., McGuire, D. K., Pieber, T. R., Pop-Busui, R., Pratley, R. E., Zinman, B., Hansen, M. B., Jia, T., Mark, T., Poulter, N. R. & the DEVOTE Study Group, DEVOTE. S. G., Jan 1 2019, (Accepted/In press) In : Diabetes Therapy.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Glucocorticoid receptor expression is associated with inferior overall survival independent of BRCA mutation status in ovarian cancer

Veneris, J. T., Huang, L., Churpek, J. E., Conzen, S. D. & Fleming, G. F., Feb 1 2019, In : International Journal of Gynecological Cancer. 29, 2, p. 357-364 8 p.

Research output: Contribution to journalArticle

Glucocorticoid receptor modulation decreases ER-positive breast cancer cell proliferation and suppresses wild-type and mutant ER chromatin association

Tonsing-Carter, E., Hernandez, K. M., Kim, C. R., Harkless, R. V., Oh, A., Bowie, K. R., West-Szymanski, D. C., Betancourt-Ponce, M. A., Green, B. D., Lastra, R. R., Fleming, G. F., Chandarlapaty, S. & Conzen, S. D., Jul 24 2019, In : Breast cancer research : BCR. 21, 1, 1 p.

Research output: Contribution to journalArticle

Open Access

Glucose Metabolism in Cardiac Hypertrophy and Heart Failure

Tran, D. H. & Wang, Z., Jun 18 2019, In : Journal of the American Heart Association. 8, 12, p. e012673

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Got Milk? Design and Implementation of a Lactation Support Program for Surgeons

Livingston-Rosanoff, D., Shubeck, S. P., Kanters, A. E., Dossett, L. A., Minter, R. M. & Wilke, L. G., Jul 1 2019, In : Annals of surgery. 270, 1, p. 31-32 2 p.

Research output: Contribution to journalShort survey

1 Scopus citations

GPCR signaling inhibits mTORC1 via PKA phosphorylation of Raptor

Jewell, J. L., Fu, V., Hong, A. W., Yu, F. X., Meng, D., Melick, C. H., Wang, H., Lam, W. L. M., Yuan, H. X., Taylor, S. S. & Guan, K. L., May 21 2019, In : eLife. 8

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

GPET: A GPU-based, accurate and efficient Monte Carlo simulation tool for PET

Lai, Y., Zhong, Y., Chalise, A., Shao, Y., Jin, M., Jia, X. & Chi, Y., Dec 13 2019, In : Physics in medicine and biology. 64, 24, 245002.

Research output: Contribution to journalArticle

1 Scopus citations

Granular cell astrocytoma: an aggressive IDH-wildtype diffuse glioma with molecular genetic features of primary glioblastoma

Vizcaino, M. A., Palsgrove, D. N., Yuan, M., Giannini, C., Cabrera-Aldana, E. E., Pallavajjala, A., Burger, P. C. & Rodriguez, F. J., Mar 2019, In : Brain Pathology. 29, 2, p. 193-204 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Kim, D., Paggi, J. M., Park, C., Bennett, C. & Salzberg, S. L., Aug 1 2019, In : Nature biotechnology. 37, 8, p. 907-915 9 p.

Research output: Contribution to journalArticle

39 Scopus citations