Find Research Outputs

2019
Bell Palsy
Immunotherapy
Melanoma
Therapeutics
Steroids
Autoimmunity
Neoplasms
Epigenomics
Autoimmune Diseases
Immune System
1 Citation (Scopus)

Automated profiling of growth cone heterogeneity defines relations between morphology and motility

Bagonis, M. M., Fusco, L., Pertz, O. & Danuser, G., Jan 7 2019, In : The Journal of cell biology. 218, 1, p. 350-379 30 p.

Research output: Contribution to journalArticle

Growth Cones
Neurites
rho GTP-Binding Proteins
Pseudopodia
Cellular Structures

Automated Pupillometry in Neurocritical Care: Research and Practice

Lussier, B. L., Olson, D. & Aiyagari, V., Oct 1 2019, In : Current Neurology and Neuroscience Reports. 19, 10, 71.

Research output: Contribution to journalReview article

Pupillary Reflex
Neurologic Examination
Intracranial Pressure
Pupil
Heart Arrest

Automated Text Message Reminders Improve Radiation Therapy Compliance

Tan, J., Christie, A., Montalvo, S. K., Wallace, C., Yan, Y., Folkerts, M., Yingling, A., Sher, D. J., Choy, H., Jiang, S. B. & Westover, K. D., Jan 1 2019, (Accepted/In press) In : International Journal of Radiation Oncology Biology Physics.

Research output: Contribution to journalArticle

Text Messaging
Synchronous Meteorological Satellite
messages
radiation therapy
Appointments and Schedules

Automatic and near real-time stylistic behavior assessment in robotic surgery

Ershad, M., Rege, R. V. & Majewicz Fey, A., Jan 1 2019, In : International Journal of Computer Assisted Radiology and Surgery.

Research output: Contribution to journalArticle

Robotics
Glossaries
Support vector machines
Labels
Classifiers
2 Citations (Scopus)

Automatic PET cervical tumor segmentation by combining deep learning and anatomic prior

Chen, L., Shen, C., Zhou, Z., Maquilan, G., Albuquerque, K., Folkert, M. R. & Wang, J., Apr 12 2019, In : Physics in medicine and biology. 64, 8, 1 p.

Research output: Contribution to journalArticle

Learning
Neoplasms
Urinary Bladder
Fluorodeoxyglucose F18
Cervix Uteri

Autonomic nervous system dysfunction in mild traumatic brain injury: a review of related pathophysiology and symptoms

Purkayastha, S., Stokes, M. & Bell, K. R., Jul 29 2019, In : Brain Injury. 33, 9, p. 1129-1136 8 p.

Research output: Contribution to journalReview article

Brain Concussion
Autonomic Nervous System
Cerebrovascular Circulation
Oxidative Stress
Mood Disorders
16 Citations (Scopus)

Autophagy induction via STING trafficking is a primordial function of the cGAS pathway

Gui, X., Yang, H., Li, T., Tan, X., Shi, P., Li, M., Du, F. & Chen, Z., Mar 14 2019, In : Nature. 567, 7747, p. 262-266 5 p.

Research output: Contribution to journalLetter

Autophagy
Interferons
GMP synthase (glutamine-hydrolyzing)
Phosphotransferases
Sea Anemones
1 Citation (Scopus)

Autophagy Keeps the Balance in Tissue Homeostasis

Buszczak, M. & Kramer, H., May 20 2019, In : Developmental Cell. 49, 4, p. 499-500 2 p.

Research output: Contribution to journalShort survey

Tissue homeostasis
Autophagy
Stem cells
Homeostasis
Cell signaling
2 Citations (Scopus)

Autophagy Regulation of Metabolism Is Required for CD8 + T Cell Anti-tumor Immunity

DeVorkin, L., Pavey, N., Carleton, G., Comber, A., Ho, C., Lim, J., McNamara, E., Huang, H., Kim, P., Zacharias, L. G., Mizushima, N., Saitoh, T., Akira, S., Beckham, W., Lorzadeh, A., Moksa, M., Cao, Q., Murthy, A., Hirst, M., DeBerardinis, R. J. & 1 others, Lum, J. J., Apr 9 2019, In : Cell Reports. 27, 2, p. 502-513.e5

Research output: Contribution to journalArticle

Open Access
T-cells
Autophagy
Metabolism
Tumors
Immunity
County Hospitals
Hospital Emergency Service
Quality Improvement
Pelvis
Radiology

A web-based multimedia athlete pre-participation questionnaire: Introducing the Video-PPE (v-PPE)

Parizher, G., Putzke, J. D., Lampert, R., Emery, M. S., Baggish, A., Martinez, M., Levine, A. & Levine, B. D., Jan 1 2019, In : British Journal of Sports Medicine.

Research output: Contribution to journalShort survey

Multimedia
Sudden Cardiac Death
Primary Prevention
Athletes
Surveys and Questionnaires
Internship and Residency
psychiatry
Psychiatry

Axl-mediated activation of TBK1 drives epithelial plasticity in pancreatic cancer

Cruz, V. H., Arner, E. N., Du, W., Bremauntz, A. E. & Brekken, R. A., Jan 1 2019, In : JCI Insight. 4, 9, e126117.

Research output: Contribution to journalArticle

Pancreatic Neoplasms
Phosphotransferases
Adenocarcinoma
Epithelial-Mesenchymal Transition
Pharmacology

A young man in "double-trouble": Hallucinations and cranial nerve palsies

Bradshaw, M. J., Lisak, R. P., Meltzer, E., Melamed, E., Lucas, A., Freeman, L., Frohman, T. C., Costello, K., Balcer, L., Galetta, S., Chitnis, T., Zamvil, S. S. & Frohman, E., Jan 1 2019, In : Neurology: Neuroimmunology and NeuroInflammation. 6, 1, e526.

Research output: Contribution to journalArticle

Open Access
Cranial Nerve Diseases
Hallucinations

Back to the drawing board

Gordon, E. E. & Jaquiss, R. D. B., Jun 1 2019, In : Journal of Thoracic and Cardiovascular Surgery. 157, 6, p. e398-e399

Research output: Contribution to journalLetter

Open Access
3 Citations (Scopus)

Bacterial pseudokinase catalyzes protein polyglutamylation to inhibit the SidE-family ubiquitin ligases

Black, M. H., Osinski, A., Gradowski, M., Servage, K. A., Pawłowski, K., Tomchick, D. R. & Tagliabracci, V. S., May 24 2019, In : Science (New York, N.Y.). 364, 6442, p. 787-792 6 p.

Research output: Contribution to journalArticle

Ligases
Ubiquitin
Protein Kinases
Legionella
Calmodulin
3 Citations (Scopus)

Bacterial stabilization of a panel of picornaviruses

Aguilera, E. R., Nguyen, Y., Sasaki, J. & Pfeiffer, J. K., Mar 1 2019, In : mSphere. 4, 2, e00183-19.

Research output: Contribution to journalArticle

Open Access
Picornaviridae
Poliovirus
Enterovirus
Kobuvirus
Bacteria

Bactericidal efficacy of hydrogen peroxide on Cutibacterium acnes

Hernandez, P., Sager, B., Fa, A., Liang, T., Lozano, C. & Khazzam, M. S., Jan 1 2019, In : Bone and Joint Research. 8, 1, p. 3-10 8 p.

Research output: Contribution to journalArticle

Acne Vulgaris
Hydrogen Peroxide
Bacteria
Microbial Sensitivity Tests
Colony-Forming Units Assay
1 Citation (Scopus)

Balance Testing Following Concussion: Postural Sway versus Complexity Index

Purkayastha, S., Adair, H. E., Woodruff, A., Ryan, L. J., Williams, B., James, E. G. & Bell, K. R., Jan 1 2019, In : PM and R.

Research output: Contribution to journalArticle

Athletes
Sports
Nonlinear Dynamics
Pressure
Entropy
Balloon Angioplasty
Pulmonary Hypertension
Lung

Bands in the Heart: Multimodality Imaging Review

Rajiah, P., MacNamara, J., Chaturvedi, A., Ashwath, R., Fulton, N. L. & Goerne, H., Sep 1 2019, In : Radiographics : a review publication of the Radiological Society of North America, Inc. 39, 5, p. 1238-1263 26 p.

Research output: Contribution to journalArticle

Papillary Muscles
Heart Ventricles
Cor Triatriatum
Chordae Tendineae
Taenia
1 Citation (Scopus)

Barrett oesophagus

Peters, Y., Al-Kaabi, A., Shaheen, N. J., Chak, A., Blum, A., Souza, R. F., Di Pietro, M., Iyer, P. G., Pech, O., Fitzgerald, R. C. & Siersema, P. D., Dec 1 2019, In : Nature Reviews Disease Primers. 5, 1, 35.

Research output: Contribution to journalReview article

Barrett Esophagus
Metaplasia
Epithelium
Hydroxymethylglutaryl-CoA Reductase Inhibitors
Proton Pump Inhibitors
1 Citation (Scopus)

Barrett’s Esophagus and Esophageal Carcinoma: Can Biomarkers Guide Clinical Practice?

Konda, V. J. A. & Souza, R. F., Apr 1 2019, In : Current Gastroenterology Reports. 21, 4, 14.

Research output: Contribution to journalReview article

Barrett Esophagus
Biomarkers
Carcinoma
Computer Simulation
Neoplasms
2 Citations (Scopus)

Barriers to adoption of laparoscopic cholecystectomy in a county hospital in Guatemala

Imran, J. B., Ochoa-Hernandez, A., Herrejon, J., Ortiz, C., Mijangos, B., Madni, T. & Huerta, S., Jan 1 2019, In : Surgical Endoscopy.

Research output: Contribution to journalArticle

Guatemala
County Hospitals
Laparoscopic Cholecystectomy
Cholecystectomy
Equipment and Supplies

Best practices in mitigating the risk of biotin interference with laboratory testing

Bowen, R., Benavides, R., Colón-Franco, J. M., Katzman, B. M., Muthukumar, A., Sadrzadeh, H., Straseski, J., Klause, U. & Tran, N., Jan 1 2019, (Accepted/In press) In : Clinical Biochemistry.

Research output: Contribution to journalReview article

Open Access
Biotin
Practice Guidelines
Testing
Immunoassay
Diagnostic Errors

Beyond bulk: a review of single cell transcriptomics methodologies and applications

Kulkarni, A., Anderson, A. G., Merullo, D. P. & Konopka, G., Aug 1 2019, In : Current Opinion in Biotechnology. 58, p. 129-136 8 p.

Research output: Contribution to journalReview article

Neurology
RNA
Brain
RNA Sequence Analysis
Gene expression

Beyond death and graft survival—Variation in outcomes after kidney transplantation. Results from the NSQIP Transplant beta phase

Parekh, J., Hirose, R., Foley, D. P., Grieco, A., Cohen, M. E., Hall, B. L., Ko, C. Y. & Greenstein, S., Jan 1 2019, In : American Journal of Transplantation.

Research output: Contribution to journalArticle

Kidney Transplantation
Urinary Tract Infections
Transplants
Surgical Wound Infection
Graft Survival

Beyond death and graft survival—Variation in outcomes after liver transplant. Results from the NSQIP transplant beta phase

Parekh, J., Greenstein, S., Sudan, D. L., Grieco, A., Cohen, M. E., Hall, B. L., Ko, C. Y. & Hirose, R., Jan 1 2019, In : American Journal of Transplantation.

Research output: Contribution to journalArticle

Graft Survival
Transplants
Surgical Wound Infection
Liver
Reoperation
1 Citation (Scopus)

Beyond the United States Medical Licensing Examination Score: Assessing Competence for Entering Residency

Radabaugh, C. L., Hawkins, R. E., Welcher, C. M., Mejicano, G. C., Aparicio, A., Kirk, L. M. & Skochelak, S. E., Jul 1 2019, In : Academic medicine : journal of the Association of American Medical Colleges. 94, 7, p. 983-989 7 p.

Research output: Contribution to journalArticle

examination
physician
education
applicant
patient care

Biallelic variants in DNA2 cause microcephalic primordial dwarfism

Tarnauskaitė, Ž., Bicknell, L. S., Marsh, J. A., Murray, J. E., Parry, D. A., Logan, C. V., Bober, M. B., de Silva, D. C., Duker, A. L., Sillence, D., Wise, C. A., Jackson, A. P., Murina, O. & Reijns, M. A. M., Jan 1 2019, In : Human Mutation. 40, 8, p. 1063-1070 8 p.

Research output: Contribution to journalArticle

Open Access
Dwarfism
Adenosine Triphosphate
Adenosine Diphosphate
Genes
Body Size

Biocompatible Nanoplatform Based on Mussel Adhesive Chemistry: Effective Assembly, Dual Mode Sensing, and Cellular Imaging Performance

Wu, N., Yu, A., Zhang, L., Liu, W., Gao, J., Zhang, C. & Zheng, Y., Jan 1 2019, In : Advanced Materials Interfaces. 1900732.

Research output: Contribution to journalArticle

Silver
Nanoparticles
Imaging techniques
Condensation reactions
T-cells

Bioengineered Approach to the Design of a Fat Graft Based on Mathematical Modeling that Predicts Oxygen Delivery

Suszynski, T. M., Rohrich, R. J., Sieber, D. A., Boyd, T. G., Thornton, J. F., Teotia, S. S., Cunningham, B. L. & Van Beek, A. L., Jun 1 2019, In : Plastic and reconstructive surgery. 143, 6, p. 1648-1655 8 p.

Research output: Contribution to journalArticle

Fats
Oxygen
Transplants
Adipose Tissue
Partial Pressure
57 Citations (Scopus)

Biological Functions of Autophagy Genes: A Disease Perspective

Levine, B. & Kroemer, G., Jan 10 2019, In : Cell. 176, 1-2, p. 11-42 32 p.

Research output: Contribution to journalReview article

Autophagy
Genes
Neurodegenerative diseases
Protein Deficiency
Aging of materials

Biomarkers for platinum sensitivity in bladder cancer: Are we there yet?

Singla, N., Ghandour, R. A. & Raj, G., Jan 1 2019, In : Translational Andrology and Urology. 8, p. S236-S239

Research output: Contribution to journalReview article

Biomechanical Efficacy of Shear-Reducing Diabetic Insoles: Elaborations on Future Design Criteria

Yavuz, M., Ersen, A., Richardson, M., Adams, L. S., Holmes, C. F., Wijesundara, M. B. J., Wukich, D. K. & La Fontaine, J., Apr 1 2019, In : Journal of Prosthetics and Orthotics. 31, 2, p. 82-86 5 p.

Research output: Contribution to journalArticle

Gait
Shoes
Orthotics
Analysis of variance (ANOVA)
Orthotic Devices
2 Citations (Scopus)

Biophysicochemical motifs in T-cell receptor sequences distinguish repertoires from tumor-infiltrating lymphocyte and adjacent healthy tissue

Ostmeyer, J., Christley, S., Toby, I. T. & Cowell, L. G., Apr 1 2019, In : Cancer Research. 79, 7, p. 1671-1680 10 p.

Research output: Contribution to journalArticle

Open Access
Tumor-Infiltrating Lymphocytes
T-Cell Antigen Receptor
Complementarity Determining Regions
Neoplasms
Antigen Receptors
2 Citations (Scopus)

Biospecimens and Molecular and Cellular Biomarkers in Aneurysmal Subarachnoid Hemorrhage Studies: Common Data Elements and Standard Reporting Recommendations

the Unruptured Intracranial Aneurysms and SAH CDE Project Investigators, Jan 1 2019, In : Neurocritical Care.

Research output: Contribution to journalArticle

Subarachnoid Hemorrhage
Biomarkers
Meta-Analysis
Guidelines
Practice Guidelines

Bleeding due to acquired dysfibrinogenemia as the initial presentation of multiple myeloma

Siddiq, N., Bergstrom, C., Anderson, L. D. & Nagalla, S., Jul 1 2019, In : BMJ Case Reports. 12, 7, e229312.

Research output: Contribution to journalArticle

Multiple Myeloma
Fibrinogen
Hemorrhage
Dexamethasone
Light
Open Access
Transesophageal Echocardiography
Fibrosis
Hemorrhage
Health

Blockade of MCU-Mediated Ca 2+ Uptake Perturbs Lipid Metabolism via PP4-Dependent AMPK Dephosphorylation

Tomar, D., Jaña, F., Dong, Z., Quinn, W. J., Jadiya, P., Breves, S. L., Daw, C. C., Srikantan, S., Shanmughapriya, S., Nemani, N., Carvalho, E., Tripathi, A., Worth, A. M., Zhang, X., Razmpour, R., Seelam, A., Rhode, S., Mehta, A. V., Murray, M., Slade, D. & 12 others, Ramirez, S. H., Mishra, P., Gerhard, G. S., Caplan, J., Norton, L., Sharma, K., Rajan, S., Balciunas, D., Wijesinghe, D. S., Ahima, R. S., Baur, J. A. & Madesh, M., Mar 26 2019, In : Cell Reports. 26, 13, p. 3709-3725.e7

Research output: Contribution to journalArticle

Open Access
AMP-Activated Protein Kinases
Lipid Metabolism
Lipids
Liver
Homeostasis
3 Citations (Scopus)
T-Lymphocytes
Antibodies
Neoplasms
Colonic Neoplasms
Colorectal Neoplasms

Blocking skeletal muscle DHPRs/Ryr1 prevents neuromuscular synapse loss in mutant mice deficient in type III Neuregulin 1 (CRD-Nrg1)

Liu, Y., Sugiura, Y., Chen, F., Lee, K. F., Ye, Q. & Lin, W., Mar 1 2019, In : PLoS genetics. 15, 3, p. e1007857

Research output: Contribution to journalArticle

Open Access
Neuregulin-1
ryanodine receptors
Ryanodine Receptor Calcium Release Channel
Muscle Denervation
Schwann Cells

Blood pressure in chronic kidney disease: conclusions from a Kidney Disease: Improving Global Outcomes (KDIGO) Controversies Conference

Conference Participants, May 1 2019, In : Kidney international. 95, 5, p. 1027-1036 10 p.

Research output: Contribution to journalArticle

Open Access
Kidney Diseases
Chronic Renal Insufficiency
Blood Pressure
Practice Management
Practice Guidelines

Blue light flexible cystoscopy with hexaminolevulinate in non-muscle-invasive bladder cancer: review of the clinical evidence and consensus statement on optimal use in the USA — update 2018

Lotan, Y., Bivalacqua, T. J., Downs, T., Huang, W., Jones, J., Kamat, A. M., Konety, B., Malmström, P. U., McKiernan, J., O’Donnell, M., Patel, S., Pohar, K., Resnick, M., Sankin, A., Smith, A., Steinberg, G., Trabulsi, E., Woods, M. & Daneshmand, S., Jan 1 2019, In : Nature Reviews Urology.

Research output: Contribution to journalReview article

Open Access
Cystoscopy
Urinary Bladder Neoplasms
Light
Recurrence
5-aminolevulinic acid hexyl ester
3 Citations (Scopus)

BOLD hemodynamic response function changes significantly with healthy aging

West, K. L., Zuppichini, M. D., Turner, M. P., Sivakolundu, D. K., Zhao, Y., Abdelkarim, D., Spence, J. S. & Rypma, B., Mar 1 2019, In : NeuroImage. 188, p. 198-207 10 p.

Research output: Contribution to journalArticle

Hemodynamics
Oxygen
Auditory Cortex
Motor Cortex
Visual Cortex
1 Citation (Scopus)

Bosniak classification of cystic renal masses, version 2019: An update proposal and needs assessment

Silverman, S. G., Pedrosa, I., Ellis, J. H., Hindman, N. M., Schieda, N., Smith, A. D., Remer, E. M., Shinagare, A. B., Curci, N. E., Raman, S. S., Wells, S. A., Kaffenberger, S. D., Wang, Z. J., Chandarana, H. & Davenport, M. S., Jan 1 2019, In : Radiology. 292, 2, p. 475-488 14 p.

Research output: Contribution to journalArticle

Open Access
Needs Assessment
Kidney
Neoplasms
Renal Cell Carcinoma

Both gain-of-function and loss-of-function de novo CACNA1A mutations cause severe developmental epileptic encephalopathies in the spectrum of Lennox-Gastaut syndrome

Jiang, X., Raju, P. K., D'Avanzo, N., Lachance, M., Pepin, J., Dubeau, F., Mitchell, W. G., Bello-Espinosa, L. E., Pierson, T. M., Minassian, B. A., Lacaille, J. C. & Rossignol, E., Jan 1 2019, (Accepted/In press) In : Epilepsia.

Research output: Contribution to journalArticle

Brain Diseases
Mutation
HEK293 Cells
Fluorescence Microscopy
Epilepsy

Both the platelet count and the platelet: lymphocyte ratio are not increased in nascent metabolic syndrome

Jialal, G., Huet, B. A. & Jialal, I., Jan 1 2019, (Accepted/In press) In : Platelets.

Research output: Contribution to journalLetter

Platelet Count
Blood Platelets
Lymphocytes
Inflammation