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  • Nick V Grishin
2020

A genomic perspective on the taxonomy of the subtribe Carcharodina (Lepidoptera: Hesperiidae: Carcharodini)

Zhang, J., Brockmann, E., Cong, Q., Shen, J. & Grishin, N. V., Mar 5 2020, In : Zootaxa. 4748, 1, p. 182-194 13 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

A lytic polysaccharide monooxygenase-like protein functions in fungal copper import and meningitis

Garcia-Santamarina, S., Probst, C., Festa, R. A., Ding, C., Smith, A. D., Conklin, S. E., Brander, S., Kinch, L. N., Grishin, N. V., Franz, K. J., Riggs-Gelasco, P., Lo Leggio, L., Johansen, K. S. & Thiele, D. J., Mar 1 2020, In : Nature chemical biology. 16, 3, p. 337-344 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Mutation severity spectrum of rare alleles in the human genome is predictive of disease type

Pei, J., Kinch, L. N., Otwinowski, Z. & Grishin, N. V., May 2020, In : PLoS Computational Biology. 16, 5, e1007775.

Research output: Contribution to journalArticle

Open Access

PCRM1exportome: Database of predicted CRM1-dependent Nuclear Export Signal (NES) motifs in cancer-related genes

Lee, Y., Baumhardt, J. M., Pei, J., Chook, Y. M. & Grishin, N. V., Feb 1 2020, In : Bioinformatics. 36, 3, p. 961-963 3 p.

Research output: Contribution to journalArticle

Recent advances suggest increased influence of selective pressure in allostery

Bhat, A. S., Dustin Schaeffer, R., Kinch, L., Medvedev, K. E. & Grishin, N. V., Jun 2020, In : Current Opinion in Structural Biology. 62, p. 183-188 6 p.

Research output: Contribution to journalReview article

RUVBL1/RUVBL2 ATPase Activity Drives PAQosome Maturation, DNA Replication and Radioresistance in Lung Cancer

Yenerall, P., Das, A., Wang, S., Kollipara, R. K., Li, L. S., Villalobos, P., Flaming, J., Lin, Y-F., Huffman, K., Timmons, B. C., Gilbreath, C., Sonavane, R., Kinch, L. N., Rodriguez-Canales, J., Moran, C., Behrens, C., Hirasawa, M., Takata, T., Murakami, R., Iwanaga, K. & 6 others, Chen, B. P. C., Grishin, N. V., Raj, G. V., Wistuba, I. I., Minna, J. D. & Kittler, R., Jan 16 2020, In : Cell Chemical Biology. 27, 1, p. 105-121.e14

Research output: Contribution to journalArticle

1 Scopus citations

Schnyder corneal dystrophy-associated UBIAD1 is defective in MK-4 synthesis and resists autophagy-mediated degradation

Jun, D. J., Schumacher, M. M., Hwang, S., Kinch, L. N., Grishin, N. V. & DeBose-Boyd, R. A., May 1 2020, In : Journal of lipid research. 61, 5, p. 746-757 12 p.

Research output: Contribution to journalArticle

Open Access

Speciation in North American Junonia from a genomic perspective

Cong, Q., Zhang, J., Shen, J., Cao, X., Brévignon, C. & Grishin, N. V., Jan 1 2020, (Accepted/In press) In : Systematic Entomology.

Research output: Contribution to journalArticle

The mitogenome of a malagasy butterfly malaza fastuosus (Mabille, 1884) recovered from the holotype collected over 140 years ago adds support for a new subfamily of hesperiidae (lepidoptera)

Zhang, J., Lees, D. C., Shen, J., Cong, Q., Huertas, B., Martin, G. & Grishin, N. V., Jan 1 2020, In : Genome. 63, 4, p. 195-202 8 p.

Research output: Contribution to journalArticle

Open Access

β-Strand-mediated interactions of protein domains

Bhat, A. S., Kinch, L. N. & Grishin, N. V., 2020, (Accepted/In press) In : Proteins: Structure, Function and Bioinformatics.

Research output: Contribution to journalArticle

2019

Assessing predictions on fitness effects of missense variants in calmodulin

Zhang, J., Kinch, L. N., Cong, Q., Katsonis, P., Lichtarge, O., Savojardo, C., Babbi, G., Martelli, P. L., Capriotti, E., Casadio, R., Garg, A., Pal, D., Weile, J., Sun, S., Verby, M., Roth, F. P. & Grishin, N. V., Jan 1 2019, (Accepted/In press) In : Human Mutation.

Research output: Contribution to journalArticle

3 Scopus citations

CASP13 target classification into tertiary structure prediction categories

Kinch, L. N., Kryshtafovych, A., Monastyrskyy, B. & Grishin, N. V., Dec 1 2019, In : Proteins: Structure, Function and Bioinformatics. 87, 12, p. 1021-1036 16 p.

Research output: Contribution to journalArticle

8 Scopus citations

Combined blockade of activating ERBB2 mutations and ER results in synthetic lethality of ERþ/HER2 mutant breast cancer

Croessmann, S., Formisano, L., Kinch, L. N., Gonzalez-Ericsson, P. I., Sudhan, D. R., Nagy, R. J., Mathew, A., Bernicker, E. H., Cristofanilli, M., He, J., Cutler, R. E., Lalani, A. S., Miller, V. A., Lanman, R. B., Grishin, N. V. & Arteaga, C. L., Jan 1 2019, In : Clinical Cancer Research. 25, 1, p. 277-289 13 p.

Research output: Contribution to journalArticle

11 Scopus citations

ECOD: Identification of distant homology among multidomain and transmembrane domain proteins

Schaeffer, R. D., Kinch, L., Medvedev, K. E., Pei, J., Cheng, H. & Grishin, N., Jun 21 2019, In : BMC Molecular and Cell Biology. 20, 1, 18.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Functional analysis of rossmann-like domains reveals convergent evolution of topology and reaction pathways

Medvedevid, K. E., Kinch, L. N., Schaeffer, R. D. & Grishin, N. V., Dec 23 2019, In : PLoS Computational Biology. 15, 12, e1007569.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Functional Assessment of Lipoyltransferase-1 Deficiency in Cells, Mice, and Humans

Ni, M., Solmonson, A., Pan, C., Yang, C., Li, D., Notzon, A., Cai, L., Guevara, G., Zacharias, L. G., Faubert, B., Vu, H. S., Jiang, L., Ko, B., Morales, N. M., Pei, J., Vale, G., Rakheja, D., Grishin, N. V., McDonald, J. G., Gotway, G. K. & 3 others, McNutt, M. C., Pascual, J. M. & DeBerardinis, R. J., Apr 30 2019, In : Cell Reports. 27, 5, p. 1376-1386.e6

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Genomes of skipper butterflies reveal extensive convergence of wing patterns

Li, W., Cong, Q., Shen, J., Zhang, J., Hallwachs, W., Janzen, D. H. & Grishin, N. V., Jan 1 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 13, p. 6232-6237 6 p.

Research output: Contribution to journalArticle

Open Access
17 Scopus citations

Genomes reveal drastic and recurrent phenotypic divergence in firetip skipper butterflies (Hesperiidae: Pyrrhopyginae)

Zhang, J., Cong, Q., Shen, J., Brockmann, E. & Grishin, N. V., May 29 2019, In : Proceedings of the Royal Society B: Biological Sciences. 286, 1903, 20190609.

Research output: Contribution to journalArticle

4 Scopus citations

Genomic analysis of the tribe Emesidini (Lepidoptera: Riodinidae)

Zhang, J., Shen, J., Cong, Q. & Grishin, N. V., Sep 12 2019, In : Zootaxa. 4668, 4, p. 475-488 14 p.

Research output: Contribution to journalArticle

Open Access

Gypsy moth genome provides insights into flight capability and virus–host interactions

Zhang, J., Cong, Q., Rex, E. A., Hallwachs, W., Janzen, D. H., Grishin, N. V. & Gammon, D. B., Jan 29 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 5, p. 1669-1678 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

How Often Do Protein Genes Navigate Valleys of Low Fitness?

Nelson, E. D. & Grishin, N. V., Apr 2019, In : Genes. 10, 4, 283.

Research output: Contribution to journalArticle

Open Access

Identification of Protein Homologs and Domain Boundaries by Iterative Sequence Alignment

Schaeffer, D. & Grishin, N. V., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 277-286 10 p. (Methods in Molecular Biology; vol. 1851).

Research output: Chapter in Book/Report/Conference proceedingChapter

Identification of residues critical for topology inversion of the transmembrane protein TM4SF20 through regulated alternative translocation

Wang, J., Kinch, L. N., Denard, B., Lee, C. E., Gharehdaghi, E. E., Grishin, N. & Ye, J., Apr 12 2019, In : Journal of Biological Chemistry. 294, 15, p. 6054-6061 8 p.

Research output: Contribution to journalArticle

Monotypy Justified: Genitalia and DNA Move Ephyriades eugramma (Mabille) to New Genus Neomorphuncus Burns (Lepidoptera: Hesperiidae: Pyrginae)

Burns, J. M., Janzen, D. H., Hallwachs, W. & Grishin, N. V., Jan 1 2019, In : Proceedings of the Entomological Society of Washington. 121, 4, p. 557-567 11 p.

Research output: Contribution to journalArticle

NK cell defects in X-linked pigmentary reticulate disorder

Starokadomskyy, P., Wilton, K. M., Krzewski, K., Lopez, A., Sifuentes-Dominguez, L., Overlee, B., Chen, Q., Ray, A., Gil-Krzewska, A., Peterson, M., Kinch, L. N., Rohena, L., Grunebaum, E., Zinn, A. R., Grishin, N. V., Billadeau, D. D. & Burstein, E., Nov 1 2019, In : JCI Insight. 4, 21, e125688.

Research output: Contribution to journalArticle

Open Access

Predicting Sequence Features, Function, and Structure of Proteins Using MESSA

Bhat, A. S. & Grishin, N. V., 2019, In : Current Protocols in Bioinformatics. 67, 1, e84.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Three new subfamilies of skipper butterflies (lepidoptera, hesperiidae)

Zhang, J., Cong, Q., Shen, J., Brockmann, E. & Grishin, N. V., Jan 1 2019, In : ZooKeys. 2019, 861, p. 91-105 15 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Unveiling one of the rarest ‘butterflies’ ever (Lepidoptera: Hesperiidae, Noctuidae)

Zilli, A. & Grishin, N. V., Apr 2019, In : Systematic Entomology. 44, 2, p. 384-395 12 p.

Research output: Contribution to journalArticle

1 Scopus citations
2018

A new species of Wahydra from Ecuador (Hesperiidae, Hesperiinae, Anthoptini)

Carneiro, E., Dolibaina, D. R., Grishin, N. V. & Warren, A. D., Mar 8 2018, In : Zootaxa. 4392, 1, p. 196-200 5 p.

Research output: Contribution to journalReview article

2 Scopus citations

A sequence family database built on ECOD structural domains

Liao, Y., Schaeffer, R. D., Pei, J. & Grishin, N. V., Sep 1 2018, In : Bioinformatics. 34, 17, p. 2997-3003 7 p.

Research output: Contribution to journalArticle

2 Scopus citations

Comparative analysis of swallowtail transcriptomes suggests molecular determinants for speciation and adaptation

Cong, Q. & Grishin, N. V., Jan 1 2018, In : Genome. 61, 12, p. 843-855 13 p.

Research output: Contribution to journalArticle

1 Scopus citations

Flatworm-specific transcriptional regulators promote the specification of tegumental progenitors in Schistosoma mansoni

Wendt, G. R., Collins, J. N., Pei, J., Pearson, M. S., Bennett, H. M., Loukas, A., Berriman, M., Grishin, N. V. & Collins, J. J., Mar 20 2018, In : eLife. 7, e33221.

Research output: Contribution to journalArticle

9 Scopus citations

FlyXCDB—A Resource for Drosophila Cell Surface and Secreted Proteins and Their Extracellular Domains

Pei, J., Kinch, L. N. & Grishin, N. V., Jan 1 2018, (Accepted/In press) In : Journal of Molecular Biology.

Research output: Contribution to journalArticle

2 Scopus citations

Functional and evolutionary analysis of viral proteins containing a Rossmann-like fold

Medvedev, K. E., Kinch, L. N. & Grishin, N. V., Aug 1 2018, In : Protein Science. 27, 8, p. 1450-1463 14 p.

Research output: Contribution to journalArticle

4 Scopus citations

Inference of epistatic effects in a key mitochondrial protein

Nelson, E. D. & Grishin, N. V., Jun 11 2018, In : Physical Review E. 97, 6, 062404.

Research output: Contribution to journalArticle

3 Scopus citations

Protein AMPylation by an Evolutionarily Conserved Pseudokinase

Sreelatha, A., Yee, S. S., Lopez, V. A., Park, B. C., Kinch, L. N., Pilch, S., Servage, K. A., Zhang, J., Jiou, J., Karasiewicz-Urbańska, M., Łobocka, M., Grishin, N. V., Orth, K. A., Kucharczyk, R., Pawłowski, K., Tomchick, D. R. & Tagliabracci, V. S., Oct 18 2018, In : Cell. 175, 3, p. 809-821.e19

Research output: Contribution to journalArticle

26 Scopus citations

Searching ECOD for Homologous Domains by Sequence and Structure

Schaeffer, R. D., Liao, Y. & Grishin, N. V., Mar 1 2018, In : Current Protocols in Bioinformatics. 61, 1, e45.

Research output: Contribution to journalArticle

2 Scopus citations

Species richness of Eurasian Zephyrus hairstreaks (Lepidoptera: Lycaenidae: Theclini) with implications on historical biogeography: An NDM/VNDM approach

Zhuang, H., Yago, M., Settele, J., Li, X., Ueshima, R., Grishin, N. V. & Wang, M., Jan 2018, In : PloS one. 13, 1, e0191049.

Research output: Contribution to journalArticle

3 Scopus citations

The Bear Giant-Skipper genome suggests genetic adaptations to living inside yucca roots

Cong, Q., Li, W., Borek, D., Otwinowski, Z. & Grishin, N. V., Jan 1 2018, (Accepted/In press) In : Molecular Genetics and Genomics.

Research output: Contribution to journalArticle

4 Scopus citations

Truncated adenomatous polyposis coli mutation induces Asef-activated Golgi fragmentation

Kim, S. B., Zhang, L., Yoon, J., Lee, J., Min, J., Li, W., Grishin, N. V., Moon, Y. A., Wright, W. E. & Shay, J. W., Sep 1 2018, In : Molecular and cellular biology. 38, 17, e00135-18.

Research output: Contribution to journalArticle

2 Scopus citations
2017

Acute hepatopancreatic necrosis disease-causing Vibrio parahaemolyticus strains maintain an antibacterial type VI secretion system with versatile effector repertoires

Li, P., Kinch, L. N., Ray, A., Dalia, A. B., Cong, Q., Nunan, L. M., Camilli, A., Grishin, N. V., Salomon, D. & Orth, K., 2017, In : Applied and Environmental Microbiology. 83, 13, e00737-17.

Research output: Contribution to journalArticle

28 Scopus citations

A new species of oxynetra from Mexico (Hesperiidae, pyrginae, pyrrhopygini)

Warren, A. D. & Grishin, N. V., Jan 1 2017, In : ZooKeys. 2017, 667, p. 155-164 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Assessing predictions of fitness effects of missense mutations in SUMO-conjugating enzyme UBE2I

Zhang, J., Kinch, L. N., Cong, Q., Weile, J., Sun, S., Cote, A. G., Roth, F. P. & Grishin, N. V., Sep 1 2017, In : Human Mutation. 38, 9, p. 1051-1063 13 p.

Research output: Contribution to journalArticle

7 Scopus citations

Complete genome of achalarus lyciades, the first representative of the eudaminae subfamily of skippers

Shen, J., Cong, Q., Borek, D., Otwinowski, Z. & Grishin, N. V., Aug 1 2017, In : Current Genomics. 18, 4, p. 366-374 9 p.

Research output: Contribution to journalArticle

10 Scopus citations

Crystal Structure of the CLOCK Transactivation Domain Exon19 in Complex with a Repressor

Hou, Z., Su, L., Pei, J., Grishin, N. V. & Zhang, H., 2017, (Accepted/In press) In : Structure.

Research output: Contribution to journalArticle

2 Scopus citations

ECOD: New developments in the evolutionary classification of domains

Dustin Schaeffer, R., Liao, Y., Cheng, H. & Grishin, N. V., Jan 1 2017, In : Nucleic Acids Research. 45, D1, p. D296-D302

Research output: Contribution to journalArticle

21 Scopus citations

Expansion of divergent SEA domains in cell surface proteins and nucleoporin 54

Pei, J. & Grishin, N. V., Mar 1 2017, In : Protein Science. 26, 3, p. 617-630 14 p.

Research output: Contribution to journalArticle

7 Scopus citations

Integrative data helps the assessment of a butterfly within the Udranomia kikkawai species complex (Lepidoptera: Hesperiidae): Immature stages, natural history, and molecular evidence

Bächtold, A., Kaminski, L. A., Magaldi, L. M., Oliveira, P. S., Del-Claro, K., Janzen, D. H., Burns, J. M., Grishin, N., Hajibabaei, M., Hallwachs, W. & Freitas, A. V. L., Jan 1 2017, In : Zoologischer Anzeiger. 266, p. 169-176 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Mitogenomes of Giant-Skipper Butterflies reveal an ancient split between deep and shallow root feeders

Grishin, N. V., Zhang, J., Cong, Q., Fan, X. L., Wang, R. & Wang, M., 2017, In : F1000Research. 6, 222.

Research output: Contribution to journalArticle

7 Scopus citations