ADMET evaluation in drug discovery. 11. PharmacoKinetics Knowledge Base (PKKB): A comprehensive database of pharmacokinetic and toxic properties for drugs

Dongyue Cao, Junmei Wang, Rui Zhou, Youyong Li, Huidong Yu, Tingjun Hou

Research output: Contribution to journalArticle

33 Citations (Scopus)

Abstract

Good and extensive experimental ADMET (absorption, distribution, metabolism, excretion, and toxicity) data is critical for developing reliable in silico ADMET models. Here we develop a PharmacoKinetics Knowledge Base (PKKB) to compile comprehensive information about ADMET properties into a single electronic repository. We incorporate more than 10 000 experimental ADMET measurements of 1685 drugs into the PKKB. The ADMET properties in the PKKB include octanol/water partition coefficient, solubility, dissociation constant, intestinal absorption, Caco-2 permeability, human bioavailability, plasma protein binding, blood-plasma partitioning ratio, volume of distribution, metabolism, half-life, excretion, urinary excretion, clearance, toxicity, half lethal dose in rat or mouse, etc. The PKKB provides the most extensive collection of freely available data for ADMET properties up to date. All these ADMET properties, as well as the pharmacological information and the calculated physiochemical properties are integrated into a web-based information system. Eleven separated data sets for octanol/water partition coefficient, solubility, blood-brain partitioning, intestinal absorption, Caco-2 permeability, human oral bioavailability, and P-glycoprotein inhibitors have been provided for free download and can be used directly for ADMET modeling. The PKKB is available online at http://cadd.suda.edu.cn/admet.

Original languageEnglish (US)
Pages (from-to)1132-1137
Number of pages6
JournalJournal of Chemical Information and Modeling
Volume52
Issue number5
DOIs
StatePublished - May 25 2012

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Pharmacokinetics
Poisons
Metabolism
Toxicity
drug
evaluation
Pharmaceutical Preparations
Octanols
permeability
Blood
Solubility
Plasmas
Drug Discovery
water
Glycoproteins
Water
P-Glycoprotein
Rats
Blood Proteins
Brain

ASJC Scopus subject areas

  • Chemistry(all)
  • Chemical Engineering(all)
  • Computer Science Applications
  • Library and Information Sciences

Cite this

ADMET evaluation in drug discovery. 11. PharmacoKinetics Knowledge Base (PKKB) : A comprehensive database of pharmacokinetic and toxic properties for drugs. / Cao, Dongyue; Wang, Junmei; Zhou, Rui; Li, Youyong; Yu, Huidong; Hou, Tingjun.

In: Journal of Chemical Information and Modeling, Vol. 52, No. 5, 25.05.2012, p. 1132-1137.

Research output: Contribution to journalArticle

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