An encyclopedia of mouse DNA elements (Mouse ENCODE)

John A. Stamatoyannopoulos, Michael Snyder, Ross Hardison, Bing Ren, Thomas Gingeras, David M. Gilbert, Mark Groudine, Michael Bender, Rajinder Kaul, Theresa Canfield, Erica Giste, Audra Johnson, Mia Zhang, Gayathri Balasundaram, Rachel Byron, Vaughan Roach, Peter J. Sabo, Richard Sandstrom, A. Sandra Stehling, Robert E. ThurmanSherman M. Weissman, Philip Cayting, Manoj Hariharan, Jin Lian, Yong Cheng, Stephen G. Landt, Zhihai Ma, Barbara J. Wold, Job Dekker, Gregory E. Crawford, Cheryl A. Keller, Weisheng Wu, Christopher Morrissey, Swathi A. Kumar, Tejaswini Mishra, Deepti Jain, Marta Byrska-Bishop, Daniel Blankenberg, Bryan R. Lajoiel, Gaurav Jain, Amartya Sanyal, Kaun Bei Chen, Olgert Denas, James Taylor, Gerd A. Blobel, Mitchell J. Weiss, Max Pimkin, Wulan Deng, Georgi K. Marinov, Brian A. Williams, Katherine I. Fisher-Aylor, Gilberto Desalvo, Anthony Kiralusha, Diane Trout, Henry Amrhein, Ali Mortazavi, Lee Edsall, David McCleary, Samantha Kuan, Yin Shen, Feng Yue, Zhen Ye, Carrie A. Davis, Chris Zaleski, Sonali Jha, Chenghai Xue, Alex Dobin, Wei Lin, Meagan Fastuca, Huaien Wang, Roderic Guigo, Sarah Djebali, Julien Lagarde, Tyrone Ryba, Takayo Sasaki, Venkat S. Malladi, Melissa S. Cline, Vanessa M. Kirkup, Katrina Learned, Kate R. Rosenbloom, W. James Kent, Elise A. Feingold, Peter J. Good, Michael Pazin, Rebecca F. Lowdon, Leslie B. Adams

Research output: Contribution to journalLetter

263 Citations (Scopus)

Abstract

To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.

Original languageEnglish (US)
Article number418
JournalGenome biology
Volume13
Issue number8
DOIs
StatePublished - Aug 13 2012
Externally publishedYes

Fingerprint

Encyclopedias
DNA
mice
Genomics
genomics
complement
genome
Genome

Keywords

  • Chip-seq
  • Comparative genomics
  • Dnasei hypersensitive sites
  • Encode project
  • Histone modifications
  • Mouse genome
  • Rna-seq
  • Transcription factor binding sites
  • Transcriptome

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics
  • Cell Biology

Cite this

Stamatoyannopoulos, J. A., Snyder, M., Hardison, R., Ren, B., Gingeras, T., Gilbert, D. M., ... Adams, L. B. (2012). An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome biology, 13(8), [418]. https://doi.org/10.1186/gb-2012-13-8-418

An encyclopedia of mouse DNA elements (Mouse ENCODE). / Stamatoyannopoulos, John A.; Snyder, Michael; Hardison, Ross; Ren, Bing; Gingeras, Thomas; Gilbert, David M.; Groudine, Mark; Bender, Michael; Kaul, Rajinder; Canfield, Theresa; Giste, Erica; Johnson, Audra; Zhang, Mia; Balasundaram, Gayathri; Byron, Rachel; Roach, Vaughan; Sabo, Peter J.; Sandstrom, Richard; Stehling, A. Sandra; Thurman, Robert E.; Weissman, Sherman M.; Cayting, Philip; Hariharan, Manoj; Lian, Jin; Cheng, Yong; Landt, Stephen G.; Ma, Zhihai; Wold, Barbara J.; Dekker, Job; Crawford, Gregory E.; Keller, Cheryl A.; Wu, Weisheng; Morrissey, Christopher; Kumar, Swathi A.; Mishra, Tejaswini; Jain, Deepti; Byrska-Bishop, Marta; Blankenberg, Daniel; Lajoiel, Bryan R.; Jain, Gaurav; Sanyal, Amartya; Chen, Kaun Bei; Denas, Olgert; Taylor, James; Blobel, Gerd A.; Weiss, Mitchell J.; Pimkin, Max; Deng, Wulan; Marinov, Georgi K.; Williams, Brian A.; Fisher-Aylor, Katherine I.; Desalvo, Gilberto; Kiralusha, Anthony; Trout, Diane; Amrhein, Henry; Mortazavi, Ali; Edsall, Lee; McCleary, David; Kuan, Samantha; Shen, Yin; Yue, Feng; Ye, Zhen; Davis, Carrie A.; Zaleski, Chris; Jha, Sonali; Xue, Chenghai; Dobin, Alex; Lin, Wei; Fastuca, Meagan; Wang, Huaien; Guigo, Roderic; Djebali, Sarah; Lagarde, Julien; Ryba, Tyrone; Sasaki, Takayo; Malladi, Venkat S.; Cline, Melissa S.; Kirkup, Vanessa M.; Learned, Katrina; Rosenbloom, Kate R.; Kent, W. James; Feingold, Elise A.; Good, Peter J.; Pazin, Michael; Lowdon, Rebecca F.; Adams, Leslie B.

In: Genome biology, Vol. 13, No. 8, 418, 13.08.2012.

Research output: Contribution to journalLetter

Stamatoyannopoulos, JA, Snyder, M, Hardison, R, Ren, B, Gingeras, T, Gilbert, DM, Groudine, M, Bender, M, Kaul, R, Canfield, T, Giste, E, Johnson, A, Zhang, M, Balasundaram, G, Byron, R, Roach, V, Sabo, PJ, Sandstrom, R, Stehling, AS, Thurman, RE, Weissman, SM, Cayting, P, Hariharan, M, Lian, J, Cheng, Y, Landt, SG, Ma, Z, Wold, BJ, Dekker, J, Crawford, GE, Keller, CA, Wu, W, Morrissey, C, Kumar, SA, Mishra, T, Jain, D, Byrska-Bishop, M, Blankenberg, D, Lajoiel, BR, Jain, G, Sanyal, A, Chen, KB, Denas, O, Taylor, J, Blobel, GA, Weiss, MJ, Pimkin, M, Deng, W, Marinov, GK, Williams, BA, Fisher-Aylor, KI, Desalvo, G, Kiralusha, A, Trout, D, Amrhein, H, Mortazavi, A, Edsall, L, McCleary, D, Kuan, S, Shen, Y, Yue, F, Ye, Z, Davis, CA, Zaleski, C, Jha, S, Xue, C, Dobin, A, Lin, W, Fastuca, M, Wang, H, Guigo, R, Djebali, S, Lagarde, J, Ryba, T, Sasaki, T, Malladi, VS, Cline, MS, Kirkup, VM, Learned, K, Rosenbloom, KR, Kent, WJ, Feingold, EA, Good, PJ, Pazin, M, Lowdon, RF & Adams, LB 2012, 'An encyclopedia of mouse DNA elements (Mouse ENCODE)', Genome biology, vol. 13, no. 8, 418. https://doi.org/10.1186/gb-2012-13-8-418
Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome biology. 2012 Aug 13;13(8). 418. https://doi.org/10.1186/gb-2012-13-8-418
Stamatoyannopoulos, John A. ; Snyder, Michael ; Hardison, Ross ; Ren, Bing ; Gingeras, Thomas ; Gilbert, David M. ; Groudine, Mark ; Bender, Michael ; Kaul, Rajinder ; Canfield, Theresa ; Giste, Erica ; Johnson, Audra ; Zhang, Mia ; Balasundaram, Gayathri ; Byron, Rachel ; Roach, Vaughan ; Sabo, Peter J. ; Sandstrom, Richard ; Stehling, A. Sandra ; Thurman, Robert E. ; Weissman, Sherman M. ; Cayting, Philip ; Hariharan, Manoj ; Lian, Jin ; Cheng, Yong ; Landt, Stephen G. ; Ma, Zhihai ; Wold, Barbara J. ; Dekker, Job ; Crawford, Gregory E. ; Keller, Cheryl A. ; Wu, Weisheng ; Morrissey, Christopher ; Kumar, Swathi A. ; Mishra, Tejaswini ; Jain, Deepti ; Byrska-Bishop, Marta ; Blankenberg, Daniel ; Lajoiel, Bryan R. ; Jain, Gaurav ; Sanyal, Amartya ; Chen, Kaun Bei ; Denas, Olgert ; Taylor, James ; Blobel, Gerd A. ; Weiss, Mitchell J. ; Pimkin, Max ; Deng, Wulan ; Marinov, Georgi K. ; Williams, Brian A. ; Fisher-Aylor, Katherine I. ; Desalvo, Gilberto ; Kiralusha, Anthony ; Trout, Diane ; Amrhein, Henry ; Mortazavi, Ali ; Edsall, Lee ; McCleary, David ; Kuan, Samantha ; Shen, Yin ; Yue, Feng ; Ye, Zhen ; Davis, Carrie A. ; Zaleski, Chris ; Jha, Sonali ; Xue, Chenghai ; Dobin, Alex ; Lin, Wei ; Fastuca, Meagan ; Wang, Huaien ; Guigo, Roderic ; Djebali, Sarah ; Lagarde, Julien ; Ryba, Tyrone ; Sasaki, Takayo ; Malladi, Venkat S. ; Cline, Melissa S. ; Kirkup, Vanessa M. ; Learned, Katrina ; Rosenbloom, Kate R. ; Kent, W. James ; Feingold, Elise A. ; Good, Peter J. ; Pazin, Michael ; Lowdon, Rebecca F. ; Adams, Leslie B. / An encyclopedia of mouse DNA elements (Mouse ENCODE). In: Genome biology. 2012 ; Vol. 13, No. 8.
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