Conserved interdomain linker promotes phase separation of the multivalent adaptor protein Nck

Sudeep Banjade, Qiong Wu, Anuradha Mittal, William B. Peeples, Rohit V. Pappu, Michael K. Rosen

Research output: Contribution to journalArticle

50 Citations (Scopus)

Abstract

The organization of membranes, the cytosol, and the nucleus of eukaryotic cells can be controlled through phase separation of lipids, proteins, and nucleic acids. Collective interactions of multivalent molecules mediated by modular binding domains can induce gelation and phase separation in several cytosolic and membrane-associated systems. The adaptor protein Nck has three SRC-homology 3 (SH3) domains that bind multiple proline-rich segments in the actin regulatory protein neuronal Wiskott-Aldrich syndrome protein (N-WASP) and an SH2 domain that binds to multiple phosphotyrosine sites in the adhesion protein nephrin, leading to phase separation. Here, we show that the 50-residue linker between the first two SH3 domains of Nck enhances phase separation of Nck/N-WASP/nephrin assemblies. Two linear motifs within this element, as well as its overall positively charged character, are important for this effect. The linker increases the driving force for self-assembly of Nck, likely through weak interactions with the second SH3 domain, and this effect appears to promote phase separation. The linker sequence is highly conserved, suggesting that the sequence determinants of the driving forces for phase separation may be generally important to Nck functions. Our studies demonstrate that linker regions between modular domains can contribute to the driving forces for self-assembly and phase separation of multivalent proteins.

Original languageEnglish (US)
Pages (from-to)E6426-E6435
JournalProceedings of the National Academy of Sciences of the United States of America
Volume112
Issue number47
DOIs
StatePublished - Nov 24 2015

Fingerprint

Neuronal Wiskott-Aldrich Syndrome Protein
Proteins
Phosphotyrosine
src Homology Domains
Membranes
Conserved Sequence
Eukaryotic Cells
Proline
Cytosol
Nucleic Acids
Actins
Lipids
Nck protein
nephrin

Keywords

  • Adaptor proteins
  • Interdomain linker
  • Intrinsically disordered
  • Multivalency
  • Phase separation

ASJC Scopus subject areas

  • General

Cite this

Conserved interdomain linker promotes phase separation of the multivalent adaptor protein Nck. / Banjade, Sudeep; Wu, Qiong; Mittal, Anuradha; Peeples, William B.; Pappu, Rohit V.; Rosen, Michael K.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, No. 47, 24.11.2015, p. E6426-E6435.

Research output: Contribution to journalArticle

Banjade, Sudeep ; Wu, Qiong ; Mittal, Anuradha ; Peeples, William B. ; Pappu, Rohit V. ; Rosen, Michael K. / Conserved interdomain linker promotes phase separation of the multivalent adaptor protein Nck. In: Proceedings of the National Academy of Sciences of the United States of America. 2015 ; Vol. 112, No. 47. pp. E6426-E6435.
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