DNA sequencing using four-color capillary array electrophoresis and energy-transfer primers

Indu Kheterpal, Jingyue Ju, Arun Radhakrishnan, Gabriel S. Brandt, Charles L. Ginther, Steven M. Clark, James R. Scherer, George F. Sensabaugh, Richard A. Mathies

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Citations (Scopus)

Abstract

A practical capillary array electrophoresis sequencer has been constructed and tested for large scale DNA sequencing. This system employs a scanning confocal optical system to detect DNA fragments electrophoresed on a capillary array. By using the recently developed energy transfer fluorescent primers, sensitive four-color detection is facilitated while exciting with just a single laser wavelength (488 nm) from an argon ion laser. Software for facile reduction of the images to four-color trace files and for automated base-calling have also been developed. This system can detect up to 25 capillaries at a time and has a raw sequencing rate of approximately 6 kilobases/hour. Applications to mitochondrial D-loop DNA sequencing are presented as a demonstration.

Original languageEnglish (US)
Title of host publicationProceedings of SPIE - The International Society for Optical Engineering
EditorsGerald E. Cohn, Steven A. Soper, C.H.W. Chen
Pages204-213
Number of pages10
Volume2680
StatePublished - 1996
EventUltrasensitive Biochemical Diagnostics - San Jose, CA, USA
Duration: Jan 31 1996Feb 2 1996

Other

OtherUltrasensitive Biochemical Diagnostics
CitySan Jose, CA, USA
Period1/31/962/2/96

Fingerprint

primers
sequencing
electrophoresis
Electrophoresis
Energy transfer
DNA
deoxyribonucleic acid
energy transfer
Color
color
Lasers
files
Optical systems
lasers
Argon
Demonstrations
argon
fragments
computer programs
Scanning

ASJC Scopus subject areas

  • Electrical and Electronic Engineering
  • Condensed Matter Physics

Cite this

Kheterpal, I., Ju, J., Radhakrishnan, A., Brandt, G. S., Ginther, C. L., Clark, S. M., ... Mathies, R. A. (1996). DNA sequencing using four-color capillary array electrophoresis and energy-transfer primers. In G. E. Cohn, S. A. Soper, & C. H. W. Chen (Eds.), Proceedings of SPIE - The International Society for Optical Engineering (Vol. 2680, pp. 204-213)

DNA sequencing using four-color capillary array electrophoresis and energy-transfer primers. / Kheterpal, Indu; Ju, Jingyue; Radhakrishnan, Arun; Brandt, Gabriel S.; Ginther, Charles L.; Clark, Steven M.; Scherer, James R.; Sensabaugh, George F.; Mathies, Richard A.

Proceedings of SPIE - The International Society for Optical Engineering. ed. / Gerald E. Cohn; Steven A. Soper; C.H.W. Chen. Vol. 2680 1996. p. 204-213.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Kheterpal, I, Ju, J, Radhakrishnan, A, Brandt, GS, Ginther, CL, Clark, SM, Scherer, JR, Sensabaugh, GF & Mathies, RA 1996, DNA sequencing using four-color capillary array electrophoresis and energy-transfer primers. in GE Cohn, SA Soper & CHW Chen (eds), Proceedings of SPIE - The International Society for Optical Engineering. vol. 2680, pp. 204-213, Ultrasensitive Biochemical Diagnostics, San Jose, CA, USA, 1/31/96.
Kheterpal I, Ju J, Radhakrishnan A, Brandt GS, Ginther CL, Clark SM et al. DNA sequencing using four-color capillary array electrophoresis and energy-transfer primers. In Cohn GE, Soper SA, Chen CHW, editors, Proceedings of SPIE - The International Society for Optical Engineering. Vol. 2680. 1996. p. 204-213
Kheterpal, Indu ; Ju, Jingyue ; Radhakrishnan, Arun ; Brandt, Gabriel S. ; Ginther, Charles L. ; Clark, Steven M. ; Scherer, James R. ; Sensabaugh, George F. ; Mathies, Richard A. / DNA sequencing using four-color capillary array electrophoresis and energy-transfer primers. Proceedings of SPIE - The International Society for Optical Engineering. editor / Gerald E. Cohn ; Steven A. Soper ; C.H.W. Chen. Vol. 2680 1996. pp. 204-213
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