ENCODE Data in the UCSC Genome Browser: Year 5 update

Kate R. Rosenbloom, Cricket A. Sloan, Venkat S. Malladi, Timothy R. Dreszer, Katrina Learned, Vanessa M. Kirkup, Matthew C. Wong, Morgan Maddren, Ruihua Fang, Steven G. Heitner, Brian T. Lee, Galt P. Barber, Rachel A. Harte, Mark Diekhans, Jeffrey C. Long, Steven P. Wilder, Ann S. Zweig, Donna Karolchik, Robert M. Kuhn, David HausslerW. James Kent

Research output: Contribution to journalArticle

462 Citations (Scopus)

Abstract

The Encyclopedia of DNA Elements (ENCODE), http://encodeproject.org, has completed its fifth year of scientific collaboration to create a comprehensive catalog of functional elements in the human genome, and its third year of investigations in the mouse genome. Since the last report in this journal, the ENCODE human data repertoire has grown by 898 new experiments (totaling 2886), accompanied by a major integrative analysis. In the mouse genome, results from 404 new experiments became available this year, increasing the total to 583, collected during the course of the project. The University of California, Santa Cruz, makes this data available on the public Genome Browser http://genome.ucsc.edu for visual browsing and data mining. Download of raw and processed data files are all supported. The ENCODE portal provides specialized tools and information about the ENCODE data sets.

Original languageEnglish (US)
Pages (from-to)D56-D63
JournalNucleic acids research
Volume41
Issue numberD1
DOIs
StatePublished - Jan 1 2013
Externally publishedYes

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Encyclopedias
Genome
DNA
Data Mining
Information Storage and Retrieval
Human Genome

ASJC Scopus subject areas

  • Genetics

Cite this

Rosenbloom, K. R., Sloan, C. A., Malladi, V. S., Dreszer, T. R., Learned, K., Kirkup, V. M., ... Kent, W. J. (2013). ENCODE Data in the UCSC Genome Browser: Year 5 update. Nucleic acids research, 41(D1), D56-D63. https://doi.org/10.1093/nar/gks1172

ENCODE Data in the UCSC Genome Browser : Year 5 update. / Rosenbloom, Kate R.; Sloan, Cricket A.; Malladi, Venkat S.; Dreszer, Timothy R.; Learned, Katrina; Kirkup, Vanessa M.; Wong, Matthew C.; Maddren, Morgan; Fang, Ruihua; Heitner, Steven G.; Lee, Brian T.; Barber, Galt P.; Harte, Rachel A.; Diekhans, Mark; Long, Jeffrey C.; Wilder, Steven P.; Zweig, Ann S.; Karolchik, Donna; Kuhn, Robert M.; Haussler, David; Kent, W. James.

In: Nucleic acids research, Vol. 41, No. D1, 01.01.2013, p. D56-D63.

Research output: Contribution to journalArticle

Rosenbloom, KR, Sloan, CA, Malladi, VS, Dreszer, TR, Learned, K, Kirkup, VM, Wong, MC, Maddren, M, Fang, R, Heitner, SG, Lee, BT, Barber, GP, Harte, RA, Diekhans, M, Long, JC, Wilder, SP, Zweig, AS, Karolchik, D, Kuhn, RM, Haussler, D & Kent, WJ 2013, 'ENCODE Data in the UCSC Genome Browser: Year 5 update', Nucleic acids research, vol. 41, no. D1, pp. D56-D63. https://doi.org/10.1093/nar/gks1172
Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM et al. ENCODE Data in the UCSC Genome Browser: Year 5 update. Nucleic acids research. 2013 Jan 1;41(D1):D56-D63. https://doi.org/10.1093/nar/gks1172
Rosenbloom, Kate R. ; Sloan, Cricket A. ; Malladi, Venkat S. ; Dreszer, Timothy R. ; Learned, Katrina ; Kirkup, Vanessa M. ; Wong, Matthew C. ; Maddren, Morgan ; Fang, Ruihua ; Heitner, Steven G. ; Lee, Brian T. ; Barber, Galt P. ; Harte, Rachel A. ; Diekhans, Mark ; Long, Jeffrey C. ; Wilder, Steven P. ; Zweig, Ann S. ; Karolchik, Donna ; Kuhn, Robert M. ; Haussler, David ; Kent, W. James. / ENCODE Data in the UCSC Genome Browser : Year 5 update. In: Nucleic acids research. 2013 ; Vol. 41, No. D1. pp. D56-D63.
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