Epistatic interactions are critical to gene-association studies

PAI-1 and risk for mortality after burn injury

Robert C. Barber, Ling Yu E Chang, Susan M. Lemaire, Agnes Burris, Gary F. Purdue, John L. Hunt, Brett D. Arnoldo, Jureta W. Horton

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

Replication of statistically significant associations between single nucleotide polymorphisms (SNPs) and disease phenotypes has been problematic. One reason for conflicting observations may be failure to consider confounding factors, including gene-gene (epistatic) interactions. Our experience with the insertion/deletion polymorphism at -688 in the promoter region of plasminogen activator inhibitor (PAI-1) seems to support this contention and may foreshadow problems for genome-wide association scans, which tend to use unadjusted analytical methodologies. One hundred forty-nine patients with ≥15% total body surface area (TBSA) burns, without significant nonburn-related trauma (injury severity score ≤16), traumatic or anoxic brain injury or spinal cord injury who survived >48 hours postadmission were enrolled under a protocol approved by the UT Southwestern and Parkland Hospital IRBs. Clinical data were collected prospectively and candidate polymorphisms in PAI-1 (-688), toll-like receptor 4 (+896), CD14 (-159), tumor necrosis factor-α (-308), and interleukin-6 (-174) were genotyped. The PAI-1 SNP was significantly associated (P-value for trend = 0.036) with risk for death when evaluated in isolation by unadjusted analysis. However, after adjustment for potential confounders using multiple logistic regression, only age, full-thickness burn size, and CD14 genotype (as previously reported) were associated with increased mortality. Genetic association analyses should be adjusted for interactions between multiple SNPs, injury or disease characteristics, and demographic variables. Increasingly sophisticated analytical methods will be required as gene-mapping studies transition from a candidate-gene based approach to genome-wide association scans.

Original languageEnglish (US)
Pages (from-to)168-175
Number of pages8
JournalJournal of Burn Care and Research
Volume29
Issue number1
DOIs
StatePublished - Jan 2008

Fingerprint

Plasminogen Activator Inhibitor 1
Single Nucleotide Polymorphism
Mortality
Genome-Wide Association Study
Wounds and Injuries
Genes
Genetic Epistasis
Toll-Like Receptor 4
Injury Severity Score
Chromosome Mapping
Research Ethics Committees
Body Surface Area
Spinal Cord Injuries
Burns
Genetic Promoter Regions
Brain Injuries
Interleukin-6
Tumor Necrosis Factor-alpha
Logistic Models
Genotype

ASJC Scopus subject areas

  • Emergency Medicine
  • Rehabilitation
  • Surgery

Cite this

Barber, R. C., Chang, L. Y. E., Lemaire, S. M., Burris, A., Purdue, G. F., Hunt, J. L., ... Horton, J. W. (2008). Epistatic interactions are critical to gene-association studies: PAI-1 and risk for mortality after burn injury. Journal of Burn Care and Research, 29(1), 168-175. https://doi.org/10.1097/BCR.0b013e31815f59f4

Epistatic interactions are critical to gene-association studies : PAI-1 and risk for mortality after burn injury. / Barber, Robert C.; Chang, Ling Yu E; Lemaire, Susan M.; Burris, Agnes; Purdue, Gary F.; Hunt, John L.; Arnoldo, Brett D.; Horton, Jureta W.

In: Journal of Burn Care and Research, Vol. 29, No. 1, 01.2008, p. 168-175.

Research output: Contribution to journalArticle

Barber, Robert C. ; Chang, Ling Yu E ; Lemaire, Susan M. ; Burris, Agnes ; Purdue, Gary F. ; Hunt, John L. ; Arnoldo, Brett D. ; Horton, Jureta W. / Epistatic interactions are critical to gene-association studies : PAI-1 and risk for mortality after burn injury. In: Journal of Burn Care and Research. 2008 ; Vol. 29, No. 1. pp. 168-175.
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