Genome-wide promoter extraction and analysis in human, mouse, and rat.

Zhenyu Xuan, Fang Zhao, Jinhua Wang, Gengxin Chen, Michael Q. Zhang

Research output: Contribution to journalArticle

57 Citations (Scopus)

Abstract

Large-scale and high-throughput genomics research needs reliable and comprehensive genome-wide promoter annotation resources. We have conducted a systematic investigation on how to improve mammalian promoter prediction by incorporating both transcript and conservation information. This enabled us to build a better multispecies promoter annotation pipeline and hence to create CSHLmpd (Cold Spring Harbor Laboratory Mammalian Promoter Database) for the biomedical research community, which can act as a starting reference system for more refined functional annotations.

Original languageEnglish (US)
Pages (from-to)R72
JournalGenome biology
Volume6
Issue number8
StatePublished - 2005
Externally publishedYes

Fingerprint

Genomics
Biomedical Research
genome
promoter regions
Genome
Databases
rats
mice
Research
genomics
harbor
biomedical research
resource
prediction
analysis
laboratory
need
cold

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics
  • Genetics
  • Cell Biology

Cite this

Xuan, Z., Zhao, F., Wang, J., Chen, G., & Zhang, M. Q. (2005). Genome-wide promoter extraction and analysis in human, mouse, and rat. Genome biology, 6(8), R72.

Genome-wide promoter extraction and analysis in human, mouse, and rat. / Xuan, Zhenyu; Zhao, Fang; Wang, Jinhua; Chen, Gengxin; Zhang, Michael Q.

In: Genome biology, Vol. 6, No. 8, 2005, p. R72.

Research output: Contribution to journalArticle

Xuan, Z, Zhao, F, Wang, J, Chen, G & Zhang, MQ 2005, 'Genome-wide promoter extraction and analysis in human, mouse, and rat.', Genome biology, vol. 6, no. 8, pp. R72.
Xuan, Zhenyu ; Zhao, Fang ; Wang, Jinhua ; Chen, Gengxin ; Zhang, Michael Q. / Genome-wide promoter extraction and analysis in human, mouse, and rat. In: Genome biology. 2005 ; Vol. 6, No. 8. pp. R72.
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