Haplotype and cell proliferation analyses of candidate lung cancer susceptibility genes on chromosome 15q24-25.1

Liu Yan, Liu Pengyuan, Wen Weidong, Michael A. James, Wang Yian, Joan E. Bailey-Wilson, Christopher I. Amos, Susan M. Pinney, Yang Ping, Mariza De Andrade, Gloria M. Petersen, Jonathan S. Wiest, Pamela R. Fain, Ann G. Schwartz, Adi Gazdar, Colette Gaba, Henry Rothschild, Diptasri Mandal, Elena Kupert, Juwon Lee & 4 others Daniela Seminara, John Minna, Marshall W. Anderson, You Ming

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Abstract

Recent genome-wide association studies have linked the chromosome 15q24-25.1 locus to nicotine addiction and lung cancer susceptibility. To refine the 15q24-25.1 locus,we performed a haplotype-based association analysis of 194 familial lung cases and 219 cancer-free controls from the Genetic Epidemiology of Lung Cancer Consortium (GELCC) collection,and used proliferation and apoptosis analyses to determine which gene(s) in the 15q24-25.1 locus mediates effects on lung cancer cell growth in vitro. We identified two distinct subregions, hapL (P = 3.20 X 10-6) and hapN (P = 1.51 X 10 -6),which were significantly associated with familial lung cancer. hapL encompasses IREB2, LOC123688,and PSMA4, and hapN encompasses the three nicotinic acetylcholine receptor subunit genes CHRNA5, CHRNA3,and CHRNB4. Examination of the genes around hapL revealed that PSMA4 plays a role in promoting cancer cell proliferation. PSMA4 mRNA levels were increased in lung tumors compared with normal lung tissues. Down-regulation of PSMA4 expression decreased proteasome activity and induced apoptosis. Proteasome dysfunction leads to many diseases including cancer,and drugs that inhibit proteasome activity show promise as a form of cancer treatment. Genes around hapN were also investigated, but did not show any direct effect on lung cancer cell proliferation. We concluded that PSMA4 is a strong candidate mediator of lung cancer cell growth,and may directly affect lung cancer susceptibility through its modulation of cell proliferation and apoptosis.

Original languageEnglish (US)
Pages (from-to)7844-7850
Number of pages7
JournalCancer Research
Volume69
Issue number19
DOIs
StatePublished - Oct 1 2009

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Neoplasm Genes
Haplotypes
Lung Neoplasms
Chromosomes
Cell Proliferation
Proteasome Endopeptidase Complex
Neoplasms
Apoptosis
Lung
Genes
Molecular Epidemiology
Genome-Wide Association Study
Nicotinic Receptors
Growth
Nicotine
Down-Regulation
Messenger RNA
Pharmaceutical Preparations

ASJC Scopus subject areas

  • Cancer Research
  • Oncology

Cite this

Yan, L., Pengyuan, L., Weidong, W., James, M. A., Yian, W., Bailey-Wilson, J. E., ... Ming, Y. (2009). Haplotype and cell proliferation analyses of candidate lung cancer susceptibility genes on chromosome 15q24-25.1. Cancer Research, 69(19), 7844-7850. https://doi.org/10.1158/0008-5472.CAN-09-1833

Haplotype and cell proliferation analyses of candidate lung cancer susceptibility genes on chromosome 15q24-25.1. / Yan, Liu; Pengyuan, Liu; Weidong, Wen; James, Michael A.; Yian, Wang; Bailey-Wilson, Joan E.; Amos, Christopher I.; Pinney, Susan M.; Ping, Yang; De Andrade, Mariza; Petersen, Gloria M.; Wiest, Jonathan S.; Fain, Pamela R.; Schwartz, Ann G.; Gazdar, Adi; Gaba, Colette; Rothschild, Henry; Mandal, Diptasri; Kupert, Elena; Lee, Juwon; Seminara, Daniela; Minna, John; Anderson, Marshall W.; Ming, You.

In: Cancer Research, Vol. 69, No. 19, 01.10.2009, p. 7844-7850.

Research output: Contribution to journalArticle

Yan, L, Pengyuan, L, Weidong, W, James, MA, Yian, W, Bailey-Wilson, JE, Amos, CI, Pinney, SM, Ping, Y, De Andrade, M, Petersen, GM, Wiest, JS, Fain, PR, Schwartz, AG, Gazdar, A, Gaba, C, Rothschild, H, Mandal, D, Kupert, E, Lee, J, Seminara, D, Minna, J, Anderson, MW & Ming, Y 2009, 'Haplotype and cell proliferation analyses of candidate lung cancer susceptibility genes on chromosome 15q24-25.1', Cancer Research, vol. 69, no. 19, pp. 7844-7850. https://doi.org/10.1158/0008-5472.CAN-09-1833
Yan, Liu ; Pengyuan, Liu ; Weidong, Wen ; James, Michael A. ; Yian, Wang ; Bailey-Wilson, Joan E. ; Amos, Christopher I. ; Pinney, Susan M. ; Ping, Yang ; De Andrade, Mariza ; Petersen, Gloria M. ; Wiest, Jonathan S. ; Fain, Pamela R. ; Schwartz, Ann G. ; Gazdar, Adi ; Gaba, Colette ; Rothschild, Henry ; Mandal, Diptasri ; Kupert, Elena ; Lee, Juwon ; Seminara, Daniela ; Minna, John ; Anderson, Marshall W. ; Ming, You. / Haplotype and cell proliferation analyses of candidate lung cancer susceptibility genes on chromosome 15q24-25.1. In: Cancer Research. 2009 ; Vol. 69, No. 19. pp. 7844-7850.
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AU - Yan, Liu

AU - Pengyuan, Liu

AU - Weidong, Wen

AU - James, Michael A.

AU - Yian, Wang

AU - Bailey-Wilson, Joan E.

AU - Amos, Christopher I.

AU - Pinney, Susan M.

AU - Ping, Yang

AU - De Andrade, Mariza

AU - Petersen, Gloria M.

AU - Wiest, Jonathan S.

AU - Fain, Pamela R.

AU - Schwartz, Ann G.

AU - Gazdar, Adi

AU - Gaba, Colette

AU - Rothschild, Henry

AU - Mandal, Diptasri

AU - Kupert, Elena

AU - Lee, Juwon

AU - Seminara, Daniela

AU - Minna, John

AU - Anderson, Marshall W.

AU - Ming, You

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