Inflammatory Proteomic Network Analysis of Statin-treated and Lipopolysaccharide-activated Macrophages

Abu Hena M. Kamal, Jayanta K. Chakrabarty, S. M.Nashir Udden, Md Hasan Zaki, Saiful M. Chowdhury

Research output: Contribution to journalArticle

Abstract

A significant component of immune biology research is the investigation of protein encoding genes that play central roles in contributing inflammatory response. A gel-free quantitative bottom-up proteomics study was performed on immune cell macrophages after the combined treatment of lipopolysaccharide (LPS) and statin drugs using mass spectrometry and a detailed bioinformatics analyses were conducted. Systematic bioinformatics analysis was applied for discovering novel relationships among proteins and effects of statin and lipopolysaccharide in macrophage cells. Based on gene ontology, majority of protein encoding genes was involved in metabolic and cellular processes and are actively associated with binding, structural molecular, and catalytic activity. Notably, proteomic data analyzed by Ingenuity Pathway Analysis (IPA), discovered the plectin and prohibitin 2 protein interactions network and inflammatory-disease based protein networks. Two up-regulated proteins, plectin and prohibitin 2, were further validated by immunoblotting. Plectin was also cross-validated by immunocytochemistry, since its expression was highly modulated by statin but inhibited during LPS-stimulation. Collectively, the significant up-regulation of plectin due to the treatment of statin, suggests that statin has a significant impact on the cytoskeletal networks of cells. Plectin might have a significant role in the intermediate filament assembly and dynamics, and possibly stabilizing and crosslinking intermediate filament networks.

Original languageEnglish (US)
Article number164
JournalScientific Reports
Volume8
Issue number1
DOIs
StatePublished - Dec 1 2018

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Plectin
Hydroxymethylglutaryl-CoA Reductase Inhibitors
Proteomics
Lipopolysaccharides
Macrophages
Intermediate Filaments
Proteins
Computational Biology
Protein Interaction Maps
Gene Ontology
Immunoblotting
Mass Spectrometry
Up-Regulation
Gels
Immunohistochemistry
Therapeutics
Research
Pharmaceutical Preparations

ASJC Scopus subject areas

  • General

Cite this

Inflammatory Proteomic Network Analysis of Statin-treated and Lipopolysaccharide-activated Macrophages. / Kamal, Abu Hena M.; Chakrabarty, Jayanta K.; Udden, S. M.Nashir; Zaki, Md Hasan; Chowdhury, Saiful M.

In: Scientific Reports, Vol. 8, No. 1, 164, 01.12.2018.

Research output: Contribution to journalArticle

Kamal, Abu Hena M. ; Chakrabarty, Jayanta K. ; Udden, S. M.Nashir ; Zaki, Md Hasan ; Chowdhury, Saiful M. / Inflammatory Proteomic Network Analysis of Statin-treated and Lipopolysaccharide-activated Macrophages. In: Scientific Reports. 2018 ; Vol. 8, No. 1.
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