Microfluidics-based selection of red-fluorescent proteins with decreased rates of photobleaching

Kevin M. Dean, Jennifer L. Lubbeck, Lloyd M. Davis, Chola K. Regmi, Prem P. Chapagain, Bernard S. Gerstman, Ralph Jimenez, Amy E. Palmer

Research output: Contribution to journalArticle

12 Citations (Scopus)

Abstract

Fluorescent proteins offer exceptional labeling specificity in living cells and organisms. Unfortunately, their photophysical properties remain far from ideal for long-term imaging of low-abundance cellular constituents, in large part because of their poor photostability. Despite widespread engineering efforts, improving the photostability of fluorescent proteins remains challenging due to lack of appropriate high-throughput selection methods. Here, we use molecular dynamics guided mutagenesis in conjunction with a recently developed microfluidic-based platform, which sorts cells based on their fluorescence photostability, to identify red fluorescent proteins with decreased photobleaching from a HeLa cell-based library. The identified mutant, named Kriek, has 2.5- and 4-fold higher photostability than its progenitor, mCherry, under widefield and confocal illumination, respectively. Furthermore, the results provide insight into mechanisms for enhancing photostability and their connections with other photophysical processes, thereby providing direction for ongoing development of fluorescent proteins with improved single-molecule and low-copy imaging capabilities. This journal is

Original languageEnglish (US)
Pages (from-to)263-273
Number of pages11
JournalIntegrative Biology (United Kingdom)
Volume7
Issue number2
DOIs
StatePublished - Feb 1 2015
Externally publishedYes

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Photobleaching
Microfluidics
Imaging techniques
Mutagenesis
Proteins
Molecular Dynamics Simulation
Lighting
HeLa Cells
Labeling
Libraries
Molecular dynamics
Fluorescence
Cells
Throughput
Molecules
red fluorescent protein

ASJC Scopus subject areas

  • Biophysics
  • Biochemistry

Cite this

Dean, K. M., Lubbeck, J. L., Davis, L. M., Regmi, C. K., Chapagain, P. P., Gerstman, B. S., ... Palmer, A. E. (2015). Microfluidics-based selection of red-fluorescent proteins with decreased rates of photobleaching. Integrative Biology (United Kingdom), 7(2), 263-273. https://doi.org/10.1039/c4ib00251b

Microfluidics-based selection of red-fluorescent proteins with decreased rates of photobleaching. / Dean, Kevin M.; Lubbeck, Jennifer L.; Davis, Lloyd M.; Regmi, Chola K.; Chapagain, Prem P.; Gerstman, Bernard S.; Jimenez, Ralph; Palmer, Amy E.

In: Integrative Biology (United Kingdom), Vol. 7, No. 2, 01.02.2015, p. 263-273.

Research output: Contribution to journalArticle

Dean, KM, Lubbeck, JL, Davis, LM, Regmi, CK, Chapagain, PP, Gerstman, BS, Jimenez, R & Palmer, AE 2015, 'Microfluidics-based selection of red-fluorescent proteins with decreased rates of photobleaching', Integrative Biology (United Kingdom), vol. 7, no. 2, pp. 263-273. https://doi.org/10.1039/c4ib00251b
Dean, Kevin M. ; Lubbeck, Jennifer L. ; Davis, Lloyd M. ; Regmi, Chola K. ; Chapagain, Prem P. ; Gerstman, Bernard S. ; Jimenez, Ralph ; Palmer, Amy E. / Microfluidics-based selection of red-fluorescent proteins with decreased rates of photobleaching. In: Integrative Biology (United Kingdom). 2015 ; Vol. 7, No. 2. pp. 263-273.
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