Multi-Signal Sedimentation Velocity Analysis with Mass Conservation for Determining the Stoichiometry of Protein Complexes

Chad A Brautigam, Shae B. Padrick, Peter Schuck

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

Multi-signal sedimentation velocity analytical ultracentrifugation (MSSV) is a powerful tool for the determination of the number, stoichiometry, and hydrodynamic shape of reversible protein complexes in two- and three-component systems. In this method, the evolution of sedimentation profiles of macromolecular mixtures is recorded simultaneously using multiple absorbance and refractive index signals and globally transformed into both spectrally and diffusion-deconvoluted component sedimentation coefficient distributions. For reactions with complex lifetimes comparable to the time-scale of sedimentation, MSSV reveals the number and stoichiometry of co-existing complexes. For systems with short complex lifetimes, MSSV reveals the composition of the reaction boundary of the coupled reaction/migration process, which we show here may be used to directly determine an association constant. A prerequisite for MSSV is that the interacting components are spectrally distinguishable, which may be a result, for example, of extrinsic chromophores or of different abundances of aromatic amino acids contributing to the UV absorbance. For interacting components that are spectrally poorly resolved, here we introduce a method for additional regularization of the spectral deconvolution by exploiting approximate knowledge of the total loading concentrations. While this novel mass conservation principle does not discriminate contributions to different species, it can be effectively combined with constraints in the sedimentation coefficient range of uncomplexed species. We show in theory, computer simulations, and experiment, how mass conservation MSSV as implemented in SEDPHAT can enhance or even substitute for the spectral discrimination of components. This should broaden the applicability of MSSV to the analysis of the composition of reversible macromolecular complexes.

Original languageEnglish (US)
Article numbere62694
JournalPLoS One
Volume8
Issue number5
DOIs
StatePublished - May 16 2013

Fingerprint

ultracentrifugation
Ultracentrifugation
stoichiometry
Sedimentation
Stoichiometry
Conservation
Proteins
proteins
absorbance
Macromolecular Substances
Aromatic Amino Acids
Refractometry
refractive index
Hydrodynamics
computer simulation
Computer Simulation
hydrodynamics
aromatic compounds
Deconvolution
Chromophores

ASJC Scopus subject areas

  • Agricultural and Biological Sciences(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Medicine(all)

Cite this

Multi-Signal Sedimentation Velocity Analysis with Mass Conservation for Determining the Stoichiometry of Protein Complexes. / Brautigam, Chad A; Padrick, Shae B.; Schuck, Peter.

In: PLoS One, Vol. 8, No. 5, e62694, 16.05.2013.

Research output: Contribution to journalArticle

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