Multiomic Analysis of the UV-Induced DNA Damage Response

Stefan Boeing; Laura Williamson; Vesela Encheva; Ilaria Gori; Rebecca E. Saunders; Rachael Instrell; Ozan Aygün; Marta Rodriguez-Martinez; Juston C. Weems; Gavin P. Kelly; Joan W. Conaway; Ronald C. Conaway; Aengus Stewart; Michael Howell; Ambrosius P. Snijders; Jesper Q. Svejstrup

doi:10.1016/j.celrep.2016.04.047

Multiomic Analysis of the UV-Induced DNA Damage Response

Stefan Boeing, Laura Williamson, Vesela Encheva, Ilaria Gori, Rebecca E. Saunders, Rachael Instrell, Ozan Aygün, Marta Rodriguez-Martinez, Juston C. Weems, Gavin P. Kelly, Joan W. Conaway, Ronald C. Conaway, Aengus Stewart, Michael Howell, Ambrosius P. Snijders, Jesper Q. Svejstrup

Research output: Contribution to journal › Article › peer-review

132 Scopus citations

Abstract

In order to facilitate the identification of factors and pathways in the cellular response to UV-induced DNA damage, several descriptive proteomic screens and a functional genomics screen were performed in parallel. Numerous factors could be identified with high confidence when the screen results were superimposed and interpreted together, incorporating biological knowledge. A searchable database, bioLOGIC, which provides access to relevant information about a protein or process of interest, was established to host the results and facilitate data mining. Besides uncovering roles in the DNA damage response for numerous proteins and complexes, including Integrator, Cohesin, PHF3, ASC-1, SCAF4, SCAF8, and SCAF11, we uncovered a role for the poorly studied, melanoma-associated serine/threonine kinase 19 (STK19). Besides effectively uncovering relevant factors, the multiomic approach also provides a systems-wide overview of the diverse cellular processes connected to the transcription-related DNA damage response.

Original language	English (US)
Pages (from-to)	1597-1610
Number of pages	14
Journal	Cell Reports
Volume	15
Issue number	7
DOIs	https://doi.org/10.1016/j.celrep.2016.04.047
State	Published - May 17 2016
Externally published	Yes

ASJC Scopus subject areas

General Biochemistry, Genetics and Molecular Biology

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Boeing, S., Williamson, L., Encheva, V., Gori, I., Saunders, R. E., Instrell, R., Aygün, O., Rodriguez-Martinez, M., Weems, J. C., Kelly, G. P., Conaway, J. W., Conaway, R. C., Stewart, A., Howell, M., Snijders, A. P., & Svejstrup, J. Q. (2016). Multiomic Analysis of the UV-Induced DNA Damage Response. Cell Reports, 15(7), 1597-1610. https://doi.org/10.1016/j.celrep.2016.04.047

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abstract = "In order to facilitate the identification of factors and pathways in the cellular response to UV-induced DNA damage, several descriptive proteomic screens and a functional genomics screen were performed in parallel. Numerous factors could be identified with high confidence when the screen results were superimposed and interpreted together, incorporating biological knowledge. A searchable database, bioLOGIC, which provides access to relevant information about a protein or process of interest, was established to host the results and facilitate data mining. Besides uncovering roles in the DNA damage response for numerous proteins and complexes, including Integrator, Cohesin, PHF3, ASC-1, SCAF4, SCAF8, and SCAF11, we uncovered a role for the poorly studied, melanoma-associated serine/threonine kinase 19 (STK19). Besides effectively uncovering relevant factors, the multiomic approach also provides a systems-wide overview of the diverse cellular processes connected to the transcription-related DNA damage response.",

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AU - Aygün, Ozan

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AU - Weems, Juston C.

AU - Kelly, Gavin P.

AU - Conaway, Joan W.

AU - Conaway, Ronald C.

AU - Stewart, Aengus

AU - Howell, Michael

AU - Snijders, Ambrosius P.

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Multiomic Analysis of the UV-Induced DNA Damage Response

Abstract

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