Mutational analysis of the NPHP4 gene in 250 patients with nephronophthisis.

Julia Hoefele, Ralf Sudbrak, Richard Reinhardt, Silvia Lehrack, Steffen Hennig, Anita Imm, Ulla Muerb, Boris Utsch, Massimo Attanasio, John F. O'Toole, Edgar Otto, Friedhelm Hildebrandt

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Abstract

Nephronophthisis (NPH), a recessive cystic kidney disease, is the most frequent genetic cause for end-stage renal disease in the first two decades of life. Mutations in three genes (NPHP1, 2, and 3) were identified as causative. Extrarenal manifestations are known, such as retinitis pigmentosa (Senior-Loken syndrome, SLS) and ocular motor apraxia type Cogan. Recently, we identified a novel gene (NPHP4) as mutated in NPH. To date, a total of only 13 different NPHP4 mutations have been described. To determine the frequency of NPHP4 mutations, we performed mutational analysis by direct sequencing of all 30 NPHP4 exons in 250 different patients with isolated NPH, SLS, or Cogan syndrome ascertained worldwide over 14 years. We identified 23 novel NPHP4 sequence variants in 26/250 different patients (10%). Interestingly, we detected homozygous or compound heterozygous mutations of NPHP4 in only 6/250 different patients (2.4%), but only one heterozygous NPHP4 sequence variant in 20/250 different patients (8%). In the six patients with two NPHP4 mutations, 5/8 mutations (63%) were likely loss-of-function mutations, whereas in the 20 patients with only one sequence variant, only 1/20 (5%) was a likely loss-of-function (i.e., truncating) mutation. We conclude that: i) two recessive mutations in NPHP4 are a rare cause of nephronophthisis; ii) single heterozygous NPHP4 sequence variants are three times more prevalent than two recessive mutations; iii) there is no genotype/phenotype correlation; iv) there must exist further genes causing nephronophthisis, since in 224/250 (90%) patients, no sequence variants in either of the four NPH genes were detected.

Original languageEnglish (US)
Pages (from-to)411
Number of pages1
JournalHuman mutation.
Volume25
Issue number4
StatePublished - Apr 2005

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Mutation
Genes
Cogan Syndrome
Cystic Kidney Diseases
Retinitis Pigmentosa
Genetic Association Studies
Mutation Rate
Chronic Kidney Failure
Exons
Senior Loken Syndrome

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

Cite this

Hoefele, J., Sudbrak, R., Reinhardt, R., Lehrack, S., Hennig, S., Imm, A., ... Hildebrandt, F. (2005). Mutational analysis of the NPHP4 gene in 250 patients with nephronophthisis. Human mutation., 25(4), 411.

Mutational analysis of the NPHP4 gene in 250 patients with nephronophthisis. / Hoefele, Julia; Sudbrak, Ralf; Reinhardt, Richard; Lehrack, Silvia; Hennig, Steffen; Imm, Anita; Muerb, Ulla; Utsch, Boris; Attanasio, Massimo; O'Toole, John F.; Otto, Edgar; Hildebrandt, Friedhelm.

In: Human mutation., Vol. 25, No. 4, 04.2005, p. 411.

Research output: Contribution to journalArticle

Hoefele, J, Sudbrak, R, Reinhardt, R, Lehrack, S, Hennig, S, Imm, A, Muerb, U, Utsch, B, Attanasio, M, O'Toole, JF, Otto, E & Hildebrandt, F 2005, 'Mutational analysis of the NPHP4 gene in 250 patients with nephronophthisis.', Human mutation., vol. 25, no. 4, pp. 411.
Hoefele J, Sudbrak R, Reinhardt R, Lehrack S, Hennig S, Imm A et al. Mutational analysis of the NPHP4 gene in 250 patients with nephronophthisis. Human mutation. 2005 Apr;25(4):411.
Hoefele, Julia ; Sudbrak, Ralf ; Reinhardt, Richard ; Lehrack, Silvia ; Hennig, Steffen ; Imm, Anita ; Muerb, Ulla ; Utsch, Boris ; Attanasio, Massimo ; O'Toole, John F. ; Otto, Edgar ; Hildebrandt, Friedhelm. / Mutational analysis of the NPHP4 gene in 250 patients with nephronophthisis. In: Human mutation. 2005 ; Vol. 25, No. 4. pp. 411.
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title = "Mutational analysis of the NPHP4 gene in 250 patients with nephronophthisis.",
abstract = "Nephronophthisis (NPH), a recessive cystic kidney disease, is the most frequent genetic cause for end-stage renal disease in the first two decades of life. Mutations in three genes (NPHP1, 2, and 3) were identified as causative. Extrarenal manifestations are known, such as retinitis pigmentosa (Senior-Loken syndrome, SLS) and ocular motor apraxia type Cogan. Recently, we identified a novel gene (NPHP4) as mutated in NPH. To date, a total of only 13 different NPHP4 mutations have been described. To determine the frequency of NPHP4 mutations, we performed mutational analysis by direct sequencing of all 30 NPHP4 exons in 250 different patients with isolated NPH, SLS, or Cogan syndrome ascertained worldwide over 14 years. We identified 23 novel NPHP4 sequence variants in 26/250 different patients (10{\%}). Interestingly, we detected homozygous or compound heterozygous mutations of NPHP4 in only 6/250 different patients (2.4{\%}), but only one heterozygous NPHP4 sequence variant in 20/250 different patients (8{\%}). In the six patients with two NPHP4 mutations, 5/8 mutations (63{\%}) were likely loss-of-function mutations, whereas in the 20 patients with only one sequence variant, only 1/20 (5{\%}) was a likely loss-of-function (i.e., truncating) mutation. We conclude that: i) two recessive mutations in NPHP4 are a rare cause of nephronophthisis; ii) single heterozygous NPHP4 sequence variants are three times more prevalent than two recessive mutations; iii) there is no genotype/phenotype correlation; iv) there must exist further genes causing nephronophthisis, since in 224/250 (90{\%}) patients, no sequence variants in either of the four NPH genes were detected.",
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