Practical lessons from protein structure prediction

Krzysztof Ginalski, Nick V. Grishin, Adam Godzik, Leszek Rychlewski

Research output: Contribution to journalArticle

116 Citations (Scopus)

Abstract

Despite recent efforts to develop automated protein structure determination protocols, structural genomics projects are slow in generating fold assignments for complete proteomes, and spatial structures remain unknown for many protein families. Alternative cheap and fast methods to assign folds using prediction algorithms continue to provide valuable structural information for many proteins. The development of high-quality prediction methods has been boosted in the last years by objective community-wide assessment experiments. This paper gives an overview of the currently available practical approaches to protein structure prediction capable of generating accurate fold assignment. Recent advances in assessment of the prediction quality are also discussed.

Original languageEnglish (US)
Pages (from-to)1874-1891
Number of pages18
JournalNucleic Acids Research
Volume33
Issue number6
DOIs
StatePublished - 2005

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Proteins
Proteome
Genomics

ASJC Scopus subject areas

  • Genetics

Cite this

Practical lessons from protein structure prediction. / Ginalski, Krzysztof; Grishin, Nick V.; Godzik, Adam; Rychlewski, Leszek.

In: Nucleic Acids Research, Vol. 33, No. 6, 2005, p. 1874-1891.

Research output: Contribution to journalArticle

Ginalski, K, Grishin, NV, Godzik, A & Rychlewski, L 2005, 'Practical lessons from protein structure prediction', Nucleic Acids Research, vol. 33, no. 6, pp. 1874-1891. https://doi.org/10.1093/nar/gki327
Ginalski, Krzysztof ; Grishin, Nick V. ; Godzik, Adam ; Rychlewski, Leszek. / Practical lessons from protein structure prediction. In: Nucleic Acids Research. 2005 ; Vol. 33, No. 6. pp. 1874-1891.
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