Prevalence and evolutionary origins of autoimmune susceptibility alleles in natural mouse populations

N. Limaye, K. A. Belobrajdic, A. E. Wandstrat, F. Bonhomme, S. V. Edwards, E. K. Wakeland

Research output: Contribution to journalArticle

19 Citations (Scopus)

Abstract

The evolutionary origin of genetic diversity in the SLAM/CD2 gene cluster, implicated in autoimmune lupus susceptibility in mice, was investigated by sequence analysis of exons from six members of the cluster in 48 wild mouse samples derived from the global mouse population. A total of 80 coding region SNPs were identified among the six genes analyzed, indicating that this gene cluster is highly polymorphic in natural mouse populations. Phylogenetic analyses of these allelic sequences revealed clustering of alleles derived from multiple Mus species and subspecies, indicating alleles at several SLAM/CD2 loci were present in ancestral Mus populations prior to speciation and have persisted as polymorphisms for more than 1 million years. Analyses of nonsynonymous/synonymous ratios using likelihood codon substitution models identified several segments in Cd229, Cd48 and Cd84 that were impacted by positive diversifying selective pressures. These findings support the interpretation that selection favoring the generation and retention of functional polymorphisms has played a role in the evolutionary origin of genetic polymorphisms that are predisposing to autoimmunity.

Original languageEnglish (US)
Pages (from-to)61-68
Number of pages8
JournalGenes and Immunity
Volume9
Issue number1
DOIs
StatePublished - Jan 2008

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Alleles
Population
Multigene Family
Sequence Analysis
Genetic Polymorphisms
Autoimmunity
Codon
Single Nucleotide Polymorphism
Cluster Analysis
Exons
Genes

ASJC Scopus subject areas

  • Genetics(clinical)
  • Immunology
  • Genetics

Cite this

Prevalence and evolutionary origins of autoimmune susceptibility alleles in natural mouse populations. / Limaye, N.; Belobrajdic, K. A.; Wandstrat, A. E.; Bonhomme, F.; Edwards, S. V.; Wakeland, E. K.

In: Genes and Immunity, Vol. 9, No. 1, 01.2008, p. 61-68.

Research output: Contribution to journalArticle

Limaye, N. ; Belobrajdic, K. A. ; Wandstrat, A. E. ; Bonhomme, F. ; Edwards, S. V. ; Wakeland, E. K. / Prevalence and evolutionary origins of autoimmune susceptibility alleles in natural mouse populations. In: Genes and Immunity. 2008 ; Vol. 9, No. 1. pp. 61-68.
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