Recorded scan times can limit the accuracy of sedimentation coefficients in analytical ultracentrifugation

Huaying Zhao, Rodolfo Ghirlando, Grzegorz Piszczek, Ute Curth, Chad A. Brautigam, Peter Schuck

Research output: Contribution to journalArticle

57 Citations (Scopus)

Abstract

We report systematic and large inaccuracies in the recorded elapsed time in data files from the analytical ultracentrifuge, leading to overestimates of the sedimentation coefficients of up to 10%. This far exceeds previously considered factors contributing to the uncertainty in this parameter and has significant ramifications for derived parameters such as hydrodynamic shape and molar mass estimates. The source of this error is currently unknown, but we found it to be quantitatively consistent across different instruments, increasing with rotor speed. Furthermore, its occurrence appears to correlate with the use of the latest data acquisition software from the manufacturer, in use in some of our laboratories for nearly 2 years. Many of the recently published sedimentation coefficients may need to be reexamined. The problem can be easily recognized by comparing the file timestamps provided by the operating system with the elapsed scan times recorded within the data files. Therefore, we implemented a routine in SEDFIT that can automatically examine the data files, alert the user to significant discrepancies, and correct the scan times accordingly. This eliminates errors in the recorded scan times.

Original languageEnglish (US)
Pages (from-to)104-108
Number of pages5
JournalAnalytical Biochemistry
Volume437
Issue number1
DOIs
StatePublished - Jun 1 2013

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Ultracentrifugation
Sedimentation
Information Storage and Retrieval
Molar mass
Data acquisition
Hydrodynamics
Rotors
Uncertainty
Research Design
Software

Keywords

  • Hydrodynamic modeling
  • Sedimentation velocity

ASJC Scopus subject areas

  • Biochemistry
  • Biophysics
  • Molecular Biology
  • Cell Biology

Cite this

Recorded scan times can limit the accuracy of sedimentation coefficients in analytical ultracentrifugation. / Zhao, Huaying; Ghirlando, Rodolfo; Piszczek, Grzegorz; Curth, Ute; Brautigam, Chad A.; Schuck, Peter.

In: Analytical Biochemistry, Vol. 437, No. 1, 01.06.2013, p. 104-108.

Research output: Contribution to journalArticle

Zhao, Huaying ; Ghirlando, Rodolfo ; Piszczek, Grzegorz ; Curth, Ute ; Brautigam, Chad A. ; Schuck, Peter. / Recorded scan times can limit the accuracy of sedimentation coefficients in analytical ultracentrifugation. In: Analytical Biochemistry. 2013 ; Vol. 437, No. 1. pp. 104-108.
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