Requirement for XLF/Cernunnos in alignment-based gap filling by DNA polymerases λ and μ for nonhomologous end joining in human whole-cell extracts

Konstantin Akopiants, Rui Zhe Zhou, Susovan Mohapatra, Kristoffer Valerie, Susan P. Lees-Miller, Kyung Jong Lee, David J. Chen, Patrick Revy, Jean Pierre de Villartay, Lawrence F. Povirk

Research output: Contribution to journalArticle

36 Citations (Scopus)

Abstract

XLF/Cernunnos is a core protein of the nonhomologous end-joining pathway of DNA double-strand break repair. To better define the role of Cernunnos in end joining, whole-cell extracts were prepared from Cernunnos-deficient human cells. These extracts effected little joining of DNA ends with cohesive 5′ or 3′ overhangs, and no joining at all of partially complementary 3′ overhangs that required gap filling prior to ligation. Assays in which gap-filled but unligated intermediates were trapped using dideoxynucleotides revealed that there was no gap filling on aligned DSB ends in the Cernunnos-deficient extracts. Recombinant Cernunnos protein restored gap filling and end joining of partially complementary overhangs, and stimulated joining of cohesive ends more than twentyfold. XLF-dependent gap filling was nearly eliminated by immunodepletion of DNA polymerase λ, but was restored by addition of either polymerase λ or polymerase μ. Thus, Cernunnos is essential for gap filling by either polymerase during nonhomologous end joining, suggesting that it plays a major role in aligning the two DNA ends in the repair complex.

Original languageEnglish (US)
Pages (from-to)4055-4062
Number of pages8
JournalNucleic Acids Research
Volume37
Issue number12
DOIs
StatePublished - 2009

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DNA-Directed DNA Polymerase
Cell Extracts
DNA End-Joining Repair
Dideoxynucleotides
Double-Stranded DNA Breaks
DNA
Recombinant Proteins
Ligation
Proteins
1,2-di-(4-sulfamidophenyl)-4-butylpyrazolidine-3,5-dione

ASJC Scopus subject areas

  • Genetics

Cite this

Requirement for XLF/Cernunnos in alignment-based gap filling by DNA polymerases λ and μ for nonhomologous end joining in human whole-cell extracts. / Akopiants, Konstantin; Zhou, Rui Zhe; Mohapatra, Susovan; Valerie, Kristoffer; Lees-Miller, Susan P.; Lee, Kyung Jong; Chen, David J.; Revy, Patrick; de Villartay, Jean Pierre; Povirk, Lawrence F.

In: Nucleic Acids Research, Vol. 37, No. 12, 2009, p. 4055-4062.

Research output: Contribution to journalArticle

Akopiants, K, Zhou, RZ, Mohapatra, S, Valerie, K, Lees-Miller, SP, Lee, KJ, Chen, DJ, Revy, P, de Villartay, JP & Povirk, LF 2009, 'Requirement for XLF/Cernunnos in alignment-based gap filling by DNA polymerases λ and μ for nonhomologous end joining in human whole-cell extracts', Nucleic Acids Research, vol. 37, no. 12, pp. 4055-4062. https://doi.org/10.1093/nar/gkp283
Akopiants, Konstantin ; Zhou, Rui Zhe ; Mohapatra, Susovan ; Valerie, Kristoffer ; Lees-Miller, Susan P. ; Lee, Kyung Jong ; Chen, David J. ; Revy, Patrick ; de Villartay, Jean Pierre ; Povirk, Lawrence F. / Requirement for XLF/Cernunnos in alignment-based gap filling by DNA polymerases λ and μ for nonhomologous end joining in human whole-cell extracts. In: Nucleic Acids Research. 2009 ; Vol. 37, No. 12. pp. 4055-4062.
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