Telomere G-rich overhang length measurement: DSN method

Yong Zhao, Jerry W. Shay, Woodring E. Wright

Research output: Chapter in Book/Report/Conference proceedingChapter

Abstract

Telomeres terminate in 3′ single-stranded G-rich overhangs that function in telomere end protection and telomerase action. An accurate measurement of overhang length is challenging due to the presence of many kilobases of double-stranded telomere DNA. Here, a simple method is described that utilizes duplex specific nuclease (DSN) to digest all double-stranded DNA including telomeres to fragments of <10 bp, leaving the single-stranded overhangs intact. Their length can then be determined by Southern blot using super-sensitive telomere C-rich probes.

Original languageEnglish (US)
Title of host publicationMethods in Molecular Biology
PublisherHumana Press Inc.
Pages55-62
Number of pages8
Volume1587
DOIs
StatePublished - 2017

Publication series

NameMethods in Molecular Biology
Volume1587
ISSN (Print)10643745

Fingerprint

Telomere
Telomerase
DNA
Southern Blotting

Keywords

  • Duplex specific nuclease (DSN)
  • G-rich overhang
  • Southern blot
  • Telomere
  • Telomere C-rich probe

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics

Cite this

Zhao, Y., Shay, J. W., & Wright, W. E. (2017). Telomere G-rich overhang length measurement: DSN method. In Methods in Molecular Biology (Vol. 1587, pp. 55-62). (Methods in Molecular Biology; Vol. 1587). Humana Press Inc.. https://doi.org/10.1007/978-1-4939-6892-3_5

Telomere G-rich overhang length measurement : DSN method. / Zhao, Yong; Shay, Jerry W.; Wright, Woodring E.

Methods in Molecular Biology. Vol. 1587 Humana Press Inc., 2017. p. 55-62 (Methods in Molecular Biology; Vol. 1587).

Research output: Chapter in Book/Report/Conference proceedingChapter

Zhao, Y, Shay, JW & Wright, WE 2017, Telomere G-rich overhang length measurement: DSN method. in Methods in Molecular Biology. vol. 1587, Methods in Molecular Biology, vol. 1587, Humana Press Inc., pp. 55-62. https://doi.org/10.1007/978-1-4939-6892-3_5
Zhao Y, Shay JW, Wright WE. Telomere G-rich overhang length measurement: DSN method. In Methods in Molecular Biology. Vol. 1587. Humana Press Inc. 2017. p. 55-62. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-4939-6892-3_5
Zhao, Yong ; Shay, Jerry W. ; Wright, Woodring E. / Telomere G-rich overhang length measurement : DSN method. Methods in Molecular Biology. Vol. 1587 Humana Press Inc., 2017. pp. 55-62 (Methods in Molecular Biology).
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