The Carbohydrate-Active EnZymes database (CAZy): An expert resource for glycogenomics

Brandi I. Cantarel, Pedro M. Coutinho, Corinne Rancurel, Thomas Bernard, Vincent Lombard, Bernard Henrissat

Research output: Contribution to journalArticle

3199 Citations (Scopus)

Abstract

The Carbohydrate-Active Enzyme (CAZy) database is a knowledge-based resource specialized in the enzymes that build and breakdown complex carbohydrates and glycoconjugates. As of September 2008, the database describes the present knowledge on 113 glycoside hydrolase, 91 glycosyltransferase, 19 polysaccharide lyase, 15 carbohydrate esterase and 52 carbohydrate-binding module families. These families are created based on experimentally characterized proteins and are populated by sequences from public databases with significant similarity. Protein biochemical information is continuously curated based on the available literature and structural information. Over 6400 proteins have assigned EC numbers and 700 proteins have a PDB structure. The classification (i) reflects the structural features of these enzymes better than their sole substrate specificity, (ii) helps to reveal the evolutionary relationships between these enzymes and (iii) provides a convenient framework to understand mechanistic properties. This resource has been available for over 10 years to the scientific community, contributing to information dissemination and providing a transversal nomenclature to glycobiologists. More recently, this resource has been used to improve the quality of functional predictions of a number genome projects by providing expert annotation. The CAZy resource resides at URL: http://www.cazy.org/.

Original languageEnglish (US)
JournalNucleic Acids Research
Volume37
Issue numberSUPPL. 1
DOIs
StatePublished - Jan 9 2009

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Carbohydrates
Databases
Enzymes
Polysaccharide-Lyases
Proteins
Glycosyltransferases
Glycoconjugates
Information Dissemination
Glycoside Hydrolases
Esterases
Substrate Specificity
Terminology
Genome

ASJC Scopus subject areas

  • Genetics

Cite this

The Carbohydrate-Active EnZymes database (CAZy) : An expert resource for glycogenomics. / Cantarel, Brandi I.; Coutinho, Pedro M.; Rancurel, Corinne; Bernard, Thomas; Lombard, Vincent; Henrissat, Bernard.

In: Nucleic Acids Research, Vol. 37, No. SUPPL. 1, 09.01.2009.

Research output: Contribution to journalArticle

Cantarel, BI, Coutinho, PM, Rancurel, C, Bernard, T, Lombard, V & Henrissat, B 2009, 'The Carbohydrate-Active EnZymes database (CAZy): An expert resource for glycogenomics', Nucleic Acids Research, vol. 37, no. SUPPL. 1. https://doi.org/10.1093/nar/gkn663
Cantarel, Brandi I. ; Coutinho, Pedro M. ; Rancurel, Corinne ; Bernard, Thomas ; Lombard, Vincent ; Henrissat, Bernard. / The Carbohydrate-Active EnZymes database (CAZy) : An expert resource for glycogenomics. In: Nucleic Acids Research. 2009 ; Vol. 37, No. SUPPL. 1.
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