The genomic landscapes of human breast and colorectal cancers

Laura D. Wood, D. Williams Parsons, Siân Jones, Jimmy Lin, Tobias Sjöblom, Rebecca J. Leary, Dong Shen, Simina M. Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A. Wilson, Joshua S. Kaminker, Zemin ZhangRandal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V Willson, Saraswati Sukumar, Kornelia Polyak, Ho Park Ben, Charit L. Pethiyagoda, P. V Krishna Pant, Dennis G. Ballinger, Andrew B. Sparks, James Hartigan, Douglas R. Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D. Markowitz, Giovanni Parmigiani, Kenneth W. Kinzler, Victor E. Velculescu, Bert Vogelstein

Research output: Contribution to journalArticle

2256 Citations (Scopus)

Abstract

Human cancer is caused by the accumulation of mutations in oncogenes and tumor suppressor genes. To catalog the genetic changes that occur during tumorigenesis, we isolated DNA from 11 breast and 11 colorectal tumors and determined the sequences of the genes in the Reference Sequence database in these samples. Based on analysis of exons representing 20,857 transcripts from 18,191 genes, we conclude that the genomic landscapes of breast and colorectal cancers are composed of a handful of commonly mutated gene "mountains" and a much larger number of gene "hills" that are mutated at low frequency. We describe statistical and bioinformatic tools that may help identify mutations with a role in tumorigenesis. These results have implications for understanding the nature and heterogeneity of human cancers and for using personal genomics for tumor diagnosis and therapy.

Original languageEnglish (US)
Pages (from-to)1108-1113
Number of pages6
JournalScience
Volume318
Issue number5853
DOIs
StatePublished - Nov 16 2007

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Colorectal Neoplasms
Breast Neoplasms
Genes
Carcinogenesis
Neoplasms
Genomics
Computational Biology
Tumor Suppressor Genes
Oncogenes
Exons
Breast
Databases
Mutation
DNA
Therapeutics

ASJC Scopus subject areas

  • General

Cite this

Wood, L. D., Parsons, D. W., Jones, S., Lin, J., Sjöblom, T., Leary, R. J., ... Vogelstein, B. (2007). The genomic landscapes of human breast and colorectal cancers. Science, 318(5853), 1108-1113. https://doi.org/10.1126/science.1145720

The genomic landscapes of human breast and colorectal cancers. / Wood, Laura D.; Parsons, D. Williams; Jones, Siân; Lin, Jimmy; Sjöblom, Tobias; Leary, Rebecca J.; Shen, Dong; Boca, Simina M.; Barber, Thomas; Ptak, Janine; Silliman, Natalie; Szabo, Steve; Dezso, Zoltan; Ustyanksky, Vadim; Nikolskaya, Tatiana; Nikolsky, Yuri; Karchin, Rachel; Wilson, Paul A.; Kaminker, Joshua S.; Zhang, Zemin; Croshaw, Randal; Willis, Joseph; Dawson, Dawn; Shipitsin, Michail; Willson, James K V; Sukumar, Saraswati; Polyak, Kornelia; Ben, Ho Park; Pethiyagoda, Charit L.; Pant, P. V Krishna; Ballinger, Dennis G.; Sparks, Andrew B.; Hartigan, James; Smith, Douglas R.; Suh, Erick; Papadopoulos, Nickolas; Buckhaults, Phillip; Markowitz, Sanford D.; Parmigiani, Giovanni; Kinzler, Kenneth W.; Velculescu, Victor E.; Vogelstein, Bert.

In: Science, Vol. 318, No. 5853, 16.11.2007, p. 1108-1113.

Research output: Contribution to journalArticle

Wood, LD, Parsons, DW, Jones, S, Lin, J, Sjöblom, T, Leary, RJ, Shen, D, Boca, SM, Barber, T, Ptak, J, Silliman, N, Szabo, S, Dezso, Z, Ustyanksky, V, Nikolskaya, T, Nikolsky, Y, Karchin, R, Wilson, PA, Kaminker, JS, Zhang, Z, Croshaw, R, Willis, J, Dawson, D, Shipitsin, M, Willson, JKV, Sukumar, S, Polyak, K, Ben, HP, Pethiyagoda, CL, Pant, PVK, Ballinger, DG, Sparks, AB, Hartigan, J, Smith, DR, Suh, E, Papadopoulos, N, Buckhaults, P, Markowitz, SD, Parmigiani, G, Kinzler, KW, Velculescu, VE & Vogelstein, B 2007, 'The genomic landscapes of human breast and colorectal cancers', Science, vol. 318, no. 5853, pp. 1108-1113. https://doi.org/10.1126/science.1145720
Wood LD, Parsons DW, Jones S, Lin J, Sjöblom T, Leary RJ et al. The genomic landscapes of human breast and colorectal cancers. Science. 2007 Nov 16;318(5853):1108-1113. https://doi.org/10.1126/science.1145720
Wood, Laura D. ; Parsons, D. Williams ; Jones, Siân ; Lin, Jimmy ; Sjöblom, Tobias ; Leary, Rebecca J. ; Shen, Dong ; Boca, Simina M. ; Barber, Thomas ; Ptak, Janine ; Silliman, Natalie ; Szabo, Steve ; Dezso, Zoltan ; Ustyanksky, Vadim ; Nikolskaya, Tatiana ; Nikolsky, Yuri ; Karchin, Rachel ; Wilson, Paul A. ; Kaminker, Joshua S. ; Zhang, Zemin ; Croshaw, Randal ; Willis, Joseph ; Dawson, Dawn ; Shipitsin, Michail ; Willson, James K V ; Sukumar, Saraswati ; Polyak, Kornelia ; Ben, Ho Park ; Pethiyagoda, Charit L. ; Pant, P. V Krishna ; Ballinger, Dennis G. ; Sparks, Andrew B. ; Hartigan, James ; Smith, Douglas R. ; Suh, Erick ; Papadopoulos, Nickolas ; Buckhaults, Phillip ; Markowitz, Sanford D. ; Parmigiani, Giovanni ; Kinzler, Kenneth W. ; Velculescu, Victor E. ; Vogelstein, Bert. / The genomic landscapes of human breast and colorectal cancers. In: Science. 2007 ; Vol. 318, No. 5853. pp. 1108-1113.
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AU - Smith, Douglas R.

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