Top-down mass spectrometry: Proteomics to proteoforms

Research output: Chapter in Book/Report/Conference proceedingChapter

11 Citations (Scopus)

Abstract

This chapter highlights many of the fundamental concepts and technologies in the field of top-down mass spectrometry (TDMS), and provides numerous examples of contributions that TD is making in biology, biophysics, and clinical investigations. TD workflows include variegated steps that may include non-specific or targeted preparative strategies, orthogonal liquid chromatography techniques, analyte ionization, mass analysis, tandem mass spectrometry (MS/MS) and informatics procedures. This diversity of experimental designs has evolved to manage the large dynamic range of protein expression and diverse physiochemical properties of proteins in proteome investigations, tackle proteoform microheterogeneity, as well as determine structure and composition of gas-phase proteins and protein assemblies.

Original languageEnglish (US)
Title of host publicationAdvances in Experimental Medicine and Biology
PublisherSpringer New York LLC
Pages171-200
Number of pages30
Volume919
DOIs
StatePublished - 2016

Publication series

NameAdvances in Experimental Medicine and Biology
Volume919
ISSN (Print)00652598
ISSN (Electronic)22148019

Fingerprint

Proteomics
Mass spectrometry
Mass Spectrometry
Proteins
Biophysics
Informatics
Workflow
Liquid chromatography
Proteome
Tandem Mass Spectrometry
Liquid Chromatography
Design of experiments
Ionization
Research Design
Gases
Technology
Chemical analysis

Keywords

  • Alternative splicing
  • Bottom-up
  • Charge reduction
  • Chromatography
  • Data-dependent
  • Data-independent
  • Electrospray ionization
  • Fourier transform
  • FT-ICR
  • Hydrogen/ deuterium exchange
  • Informatics
  • Label-free quantitation
  • Mass spectrometry
  • Membrane proteins
  • Native MS
  • Orbitrap
  • Post-translational modifications
  • Protein
  • Proteoform
  • Proteomics
  • Quadrupole ion trap
  • Reversed-phase
  • Review
  • SILAC
  • SNPs
  • Supercharging
  • Tandem MS
  • Time-of-flight
  • Topdown

ASJC Scopus subject areas

  • Medicine(all)
  • Biochemistry, Genetics and Molecular Biology(all)

Cite this

Patrie, S. M. (2016). Top-down mass spectrometry: Proteomics to proteoforms. In Advances in Experimental Medicine and Biology (Vol. 919, pp. 171-200). (Advances in Experimental Medicine and Biology; Vol. 919). Springer New York LLC. https://doi.org/10.1007/978-3-319-41448-5_8

Top-down mass spectrometry : Proteomics to proteoforms. / Patrie, Steven M.

Advances in Experimental Medicine and Biology. Vol. 919 Springer New York LLC, 2016. p. 171-200 (Advances in Experimental Medicine and Biology; Vol. 919).

Research output: Chapter in Book/Report/Conference proceedingChapter

Patrie, SM 2016, Top-down mass spectrometry: Proteomics to proteoforms. in Advances in Experimental Medicine and Biology. vol. 919, Advances in Experimental Medicine and Biology, vol. 919, Springer New York LLC, pp. 171-200. https://doi.org/10.1007/978-3-319-41448-5_8
Patrie SM. Top-down mass spectrometry: Proteomics to proteoforms. In Advances in Experimental Medicine and Biology. Vol. 919. Springer New York LLC. 2016. p. 171-200. (Advances in Experimental Medicine and Biology). https://doi.org/10.1007/978-3-319-41448-5_8
Patrie, Steven M. / Top-down mass spectrometry : Proteomics to proteoforms. Advances in Experimental Medicine and Biology. Vol. 919 Springer New York LLC, 2016. pp. 171-200 (Advances in Experimental Medicine and Biology).
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