Updates to the RMAP short-read mapping software

Andrew D. Smith; Wen Yu Chung; Emily Hodges; Jude Kendall; Greg Hannon; James Hicks; Zhenyu Xuan; Michael Q. Zhang

doi:10.1093/bioinformatics/btp533

Updates to the RMAP short-read mapping software

Andrew D. Smith, Wen Yu Chung, Emily Hodges, Jude Kendall, Greg Hannon, James Hicks, Zhenyu Xuan, Michael Q. Zhang

Research output: Contribution to journal › Article › peer-review

135 Scopus citations

Abstract

We report on a major new version of the RMAP software for mapping reads from short-read sequencing technology. General improvements to accuracy and space requirements are included, along with novel functionality. Included in the RMAP software package are tools for mapping paired-end reads, mapping using more sophisticated use of quality scores, collecting ambiguous mapping locations and mapping bisulfite-treated reads.

Original language	English (US)
Pages (from-to)	2841-2842
Number of pages	2
Journal	Bioinformatics
Volume	25
Issue number	21
DOIs	https://doi.org/10.1093/bioinformatics/btp533
State	Published - 2009
Externally published	Yes

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/btp533

Cite this

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AU - Hicks, James

AU - Xuan, Zhenyu

AU - Zhang, Michael Q.

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Updates to the RMAP short-read mapping software

Abstract

ASJC Scopus subject areas

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