• 13656 Citations
  • 7 h-Index
20112019
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Fingerprint Dive into the research topics where Daehwan Kim is active. These topic labels come from the works of this person. Together they form a unique fingerprint.

  • 9 Similar Profiles
Genes Chemical Compounds
Genome Medicine & Life Sciences
RNA Chemical Compounds
Gene Expression Profiling Medicine & Life Sciences
High-Throughput Nucleotide Sequencing Medicine & Life Sciences
Transcriptome Medicine & Life Sciences
Software Medicine & Life Sciences
RNA Sequence Analysis Medicine & Life Sciences

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Research Output 2011 2019

  • 13656 Citations
  • 7 h-Index
  • 9 Article
  • 1 Comment/debate

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Kim, D., Paggi, J. M., Park, C., Bennett, C. & Salzberg, S. L., Aug 1 2019, In : Nature biotechnology. 37, 8, p. 907-915 9 p.

Research output: Contribution to journalArticle

Graphic methods
DNA sequences
Application programs
Genes
Genotype
3 Citations (Scopus)

Genomic characterization of chromosome translocations in patients with T/myeloid mixed-phenotype acute leukemia

Pallavajjala, A., Kim, D., Li, T., Ghiaur, G., Jones, R. J., Burns, K. H., Salzberg, S. L. & Ning, Y., Sep 8 2017, (Accepted/In press) In : Leukemia and Lymphoma. p. 1-8 8 p.

Research output: Contribution to journalArticle

Leukemia
Chromosomes
Phenotype
Transcriptome
RNA Sequence Analysis
3 Citations (Scopus)

The novel fusion transcript NR5A2-KLHL29FT is generated by an insertion at the KLHL29 locus

Sun, Z., Ke, X., Salzberg, S. L., Kim, D., Antonescu, V., Cheng, Y., Huang, B., Song, J. H., Abraham, J. M., Ibrahim, S., Tian, H. & Meltzer, S. J., May 1 2017, In : Cancer. 123, 9, p. 1507-1515 9 p.

Research output: Contribution to journalArticle

Cytoplasmic and Nuclear Receptors
Colonic Neoplasms
RNA Sequence Analysis
Epithelium
Neoplasms
110 Citations (Scopus)

Centrifuge: Rapid and sensitive classification of metagenomic sequences

Kim, D., Song, L., Breitwieser, F. P. & Salzberg, S. L., Dec 1 2016, In : Genome Research. 26, 12, p. 1721-1729 9 p.

Research output: Contribution to journalArticle

Metagenomics
Archaeal Genome
High-Throughput Nucleotide Sequencing
Databases
Datasets
498 Citations (Scopus)

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Pertea, M., Kim, D., Pertea, G. M., Leek, J. T. & Salzberg, S. L., Sep 1 2016, In : Nature Protocols. 11, 9, p. 1650-1667 18 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Software
Genes
RNA
Gene expression