• 21510 Citations
  • 27 h-Index
20042019
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Research Output 2004 2019

  • 21510 Citations
  • 27 h-Index
  • 34 Article
  • 2 Comment/debate
  • 1 Chapter
  • 1 Review article
2019
1 Citation (Scopus)

Experimental and Computational Approaches for Single-Cell Enhancer Perturbation Assay

Xie, S. & Hon, G., Jan 1 2019, In : Methods in molecular biology (Clifton, N.J.). 1935, p. 203-221 19 p.

Research output: Contribution to journalArticle

Gene Expression
Human Genome
Epigenomics
Libraries
Genes
1 Citation (Scopus)

Rational Reprogramming of Cellular States by Combinatorial Perturbation

Duan, J., Li, B., Bhakta, M., Xie, S., Zhou, P., Munshi, N. V. & Hon, G., Jun 18 2019, In : Cell Reports. 27, 12, p. 3486-3499.e6

Research output: Contribution to journalArticle

Open Access
Transcription Factors
Regenerative Medicine
Libraries
Cellular Reprogramming
Atlases
1 Citation (Scopus)

Scina: Semi-supervised analysis of single cells in silico

Zhang, Z., Luo, D., Zhong, X., Choi, J. H., Ma, Y., Wang, S., Mahrt, E., Guo, W., Stawiski, E. W., Modrusan, Z., Seshagiri, S., Kapur, P., Hon, G. C., Brugarolas, J. & Wang, T., Jul 1 2019, In : Genes. 10, 7, 531.

Research output: Contribution to journalArticle

Open Access
Single-Cell Analysis
RNA Sequence Analysis
Computer Simulation
Neoplasms
Oligodendroglia

Using Gjd3-CreEGFP mice to examine atrioventricular node morphology and composition

Bhattacharyya, S., Duan, J., Wang, L., Li, B., Bhakta, M., Fernandez-Perez, A., Hon, G. & Munshi, N. V., Dec 1 2019, In : Scientific Reports. 9, 1, 2106.

Research output: Contribution to journalArticle

Atrioventricular Node
Microdissection
Atlases
Cardiac Myocytes
Confocal Microscopy
2018
7 Citations (Scopus)

A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra

Henry, G. H., Malewska, A., Joseph, D. B., Malladi, V. S., Lee, J., Torrealba, J. R., Mauck, R., Gahan, J., Raj, G., Roehrborn, C., Hon, G., MacConmara, M. P., Reese, J. C., Hutchinson, R. C., Vezina, C. M. & Strand, D. W., Dec 18 2018, In : Cell Reports. 25, 12, p. 3530-3542.e5

Research output: Contribution to journalArticle

Flow cytometry
Urethra
Ducts
Prostate
Anatomy

Erratum to: Heme enables proper positioning of Drosha and DGCR8 on primary microRNAs (Nature Communications, (2017), 8, 1, (1737), 10.1038/s41467-017-01713-y)

Partin, A. C., Ngo, T. D., Herrell, E., Jeong, B. C., Hon, G. & Nam, Y., Dec 1 2018, In : Nature Communications. 9, 1, 3852.

Research output: Contribution to journalComment/debate

MicroRNAs
Heme
positioning
communication
document markup languages
11 Citations (Scopus)

Frequent sgRNA-barcode recombination in single-cell perturbation assays

Xie, S., Cooley, A., Armendariz, D., Zhou, P. & Hon, G. C., Jun 1 2018, In : PLoS One. 13, 6, e0198635.

Research output: Contribution to journalArticle

barcoding
Genetic Recombination
Assays
Clustered Regularly Interspaced Short Palindromic Repeats
assays
21 Citations (Scopus)

Identification of functionally distinct fibro-inflammatory and adipogenic stromal subpopulations in visceral adipose tissue of adult mice

Hepler, C., Shan, B., Zhang, Q., Henry, G. H., Shao, M., Vishvanath, L., Ghaben, A. L., Mobley, A. B., Strand, D. W., Hon, G. & Gupta, R. K., Sep 28 2018, In : eLife. 7

Research output: Contribution to journalArticle

Intra-Abdominal Fat
White Adipose Tissue
Tissue
Stromal Cells
Adipocytes
3 Citations (Scopus)

Tet-assisted bisulfite sequencing (TAB-seq)

Yu, M., Han, D., Hon, G. C. & He, C., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., Vol. 1708. p. 645-663 19 p. (Methods in Molecular Biology; vol. 1708).

Research output: Chapter in Book/Report/Conference proceedingChapter

5-Methylcytosine
Genome
Cytosine
DNA
Protein Transport
2017
11 Citations (Scopus)

Heme enables proper positioning of Drosha and DGCR8 on primary microRNAs

Partin, A. C., Ngo, T. D., Herrell, E., Jeong, B. C., Hon, G. & Nam, Y., Dec 1 2017, In : Nature Communications. 8, 1, 1737.

Research output: Contribution to journalArticle

microprocessors
MicroRNAs
Heme
positioning
proteins
63 Citations (Scopus)

In Situ Capture of Chromatin Interactions by Biotinylated dCas9

Liu, X., Zhang, Y., Chen, Y., Li, M., Zhou, F., Li, K., Cao, H., Ni, M., Liu, Y., Gu, Z., Dickerson, K. E., Xie, S., Hon, G. C., Xuan, Z., Zhang, M. Q., Shao, Z. & Xu, J., Aug 24 2017, In : Cell. 170, 5, p. 1028-1043.e19

Research output: Contribution to journalArticle

Chromatin
Clustered Regularly Interspaced Short Palindromic Repeats
Purification
Genes
Guide RNA
61 Citations (Scopus)

Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells

Xie, S., Duan, J., Li, B., Zhou, P. & Hon, G. C., Apr 20 2017, In : Molecular Cell. 66, 2, p. 285-299.e5

Research output: Contribution to journalArticle

Transcriptome
Clustered Regularly Interspaced Short Palindromic Repeats
Penetrance
Gene Expression
Population
2016
65 Citations (Scopus)

An LXR-Cholesterol Axis Creates a Metabolic Co-Dependency for Brain Cancers

Villa, G. R., Hulce, J. J., Zanca, C., Bi, J., Ikegami, S., Cahill, G. L., Gu, Y., Lum, K. M., Masui, K., Yang, H., Rong, X., Hong, C., Turner, K. M., Liu, F., Hon, G. C., Jenkins, D., Martini, M., Armando, A. M., Quehenberger, O., Cloughesy, T. F. & 7 others, Furnari, F. B., Cavenee, W. K., Tontonoz, P., Gahman, T. C., Shiau, A. K., Cravatt, B. F. & Mischel, P. S., Nov 14 2016, In : Cancer Cell. 30, 5, p. 683-693 11 p.

Research output: Contribution to journalArticle

Brain Neoplasms
Cholesterol
Glioblastoma
Neoplasms
Growth Factor Receptors
2015
71 Citations (Scopus)

EGFR Mutation Promotes Glioblastoma through Epigenome and Transcription Factor Network Remodeling

Liu, F., Hon, G. C., Villa, G. R., Turner, K. M., Ikegami, S., Yang, H., Ye, Z., Li, B., Kuan, S., Lee, A. Y., Zanca, C., Wei, B., Lucey, G., Jenkins, D., Zhang, W., Barr, C. L., Furnari, F. B., Cloughesy, T. F., Yong, W. H., Gahman, T. C. & 4 others, Shiau, A. K., Cavenee, W. K., Ren, B. & Mischel, P. S., Oct 15 2015, In : Molecular Cell. 60, 2, p. 307-318 12 p.

Research output: Contribution to journalArticle

Glioblastoma
Epidermal Growth Factor Receptor
Transcription Factors
Epigenomics
Mutation
2014
141 Citations (Scopus)

5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation

Hon, G. C., Song, C. X., Du, T., Jin, F., Selvaraj, S., Lee, A. Y., Yen, C. A., Ye, Z., Mao, S. Q., Wang, B. A., Kuan, S., Edsall, L. E., Zhao, B. S., Xu, G. L., He, C. & Ren, B., Jan 1 2014, In : Molecular Cell. 56, 2, p. 286-297 12 p.

Research output: Contribution to journalArticle

DNA Methylation
Transcriptome
Dioxygenases
Cytosine
DNA
2 Citations (Scopus)

Corrigendum: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

Lister, R., Pelizzola, M., Kida, Y. S., Hawkins, R. D., Nery, J. R., Hon, G., Antosiewicz-Bourget, J., O'Malley, R., Castanon, R., Klugman, S., Downes, M., Yu, R., Stewart, R., Ren, B., Thomson, J. A., Evans, R. M. & Ecker, J. R., Oct 2 2014, In : Nature. 514, 7520, 1 p.

Research output: Contribution to journalComment/debate

773 Citations (Scopus)

N 6-methyladenosine-dependent regulation of messenger RNA stability

Wang, X., Lu, Z., Gomez, A., Hon, G. C., Yue, Y., Han, D., Fu, Y., Parisien, M., Dai, Q., Jia, G., Ren, B., Pan, T. & He, C., Jan 1 2014, In : Nature. 505, 7481, p. 117-120 4 p.

Research output: Contribution to journalArticle

RNA Stability
Messenger RNA
RNA
Untranslated RNA
Eukaryota
2013
238 Citations (Scopus)

Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues

Hon, G. C., Rajagopal, N., Shen, Y., McCleary, D. F., Yue, F., Dang, M. D. & Ren, B., Oct 1 2013, In : Nature Genetics. 45, 10, p. 1198-1206 9 p.

Research output: Contribution to journalArticle

DNA Methylation
Epigenomics
Embryonic Development
Histone Code
Gene Expression
165 Citations (Scopus)

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis

Chang, K. N., Zhong, S., Weirauch, M. T., Hon, G., Pelizzola, M., Li, H., Carol Huang, S. S., Schmitz, R. J., Urich, M. A., Kuo, D., Nery, J. R., Qiao, H., Yang, A., Jamali, A., Chen, H., Ideker, T., Ren, B., Bar-Joseph, Z., Hughes, T. R. & Ecker, J. R., Jun 11 2013, In : eLife. 2013, 2, e00675.

Research output: Contribution to journalArticle

Arabidopsis
Growth Hormone
Gases
ethylene
Plant Growth Regulators
34 Citations (Scopus)

Tet-mediated covalent labelling of 5-methylcytosine for its genome-wide detection and sequencing

Zhang, L., Szulwach, K. E., Hon, G. C., Song, C. X., Park, B., Yu, M., Lu, X., Dai, Q., Wang, X., Street, C. R., Tan, H., Min, J. H., Ren, B., Jin, P. & He, C., Mar 11 2013, In : Nature Communications. 4, 1517.

Research output: Contribution to journalArticle

5-Methylcytosine
sequencing
genome
purification
Labeling
2012
627 Citations (Scopus)

Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome

Yu, M., Hon, G. C., Szulwach, K. E., Song, C. X., Zhang, L., Kim, A., Li, X., Dai, Q., Shen, Y., Park, B., Min, J. H., Jin, P., Ren, B. & He, C., Jun 8 2012, In : Cell. 149, 6, p. 1368-1380 13 p.

Research output: Contribution to journalArticle

Genes
Genome
5-hydroxymethylcytosine
Embryonic Stem Cells
Stem cells
51 Citations (Scopus)

CBX3 regulates efficient RNA processing genome-wide

Smallwood, A., Hon, G. C., Jin, F., Henry, R. E., Espinosa, J. M. & Ren, B., Aug 1 2012, In : Genome Research. 22, 8, p. 1426-1436 11 p.

Research output: Contribution to journalArticle

Genome
RNA
Genes
Heterochromatin
Down-Regulation
297 Citations (Scopus)

Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer

Hon, G. C., Hawkins, R. D., Caballero, O. L., Lo, C., Lister, R., Pelizzola, M., Valsesia, A., Ye, Z., Kuan, S., Edsall, L. E., Camargo, A. A., Stevenson, B. J., Ecker, J. R., Bafna, V., Strausberg, R. L., Simpson, A. J. & Ren, B., Feb 1 2012, In : Genome Research. 22, 2, p. 246-258 13 p.

Research output: Contribution to journalArticle

Gene Silencing
Chromatin
Breast Neoplasms
DNA
DNA Methylation
138 Citations (Scopus)

Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine

Yu, M., Hon, G. C., Szulwach, K. E., Song, C. X., Jin, P., Ren, B. & He, C., Dec 1 2012, In : Nature Protocols. 7, 12, p. 2159-2170 12 p.

Research output: Contribution to journalArticle

5-Methylcytosine
Cytosine
Genes
Genome
Glucosyltransferases
2011
68 Citations (Scopus)

Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency

Hawkins, R. D., Hon, G. C., Yang, C., Antosiewicz-Bourget, J. E., Lee, L. K., Ngo, Q. M., Klugman, S., Ching, K. A., Edsall, L. E., Ye, Z., Kuan, S., Yu, P., Liu, H., Zhang, X., Green, R. D., Lobanenkov, V. V., Stewart, R., Thomson, J. A. & Ren, B., Oct 1 2011, In : Cell Research. 21, 10, p. 1393-1409 17 p.

Research output: Contribution to journalArticle

Regulator Genes
Chromatin
Embryonic Stem Cells
Genetic Epigenesis
Genes
1052 Citations (Scopus)

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

Lister, R., Pelizzola, M., Kida, Y. S., Hawkins, R. D., Nery, J. R., Hon, G., Antosiewicz-Bourget, J., Ogmalley, R., Castanon, R., Klugman, S., Downes, M., Yu, R., Stewart, R., Ren, B., Thomson, J. A., Evans, R. M. & Ecker, J. R., Mar 3 2011, In : Nature. 471, 7336, p. 68-73 6 p.

Research output: Contribution to journalArticle

Induced Pluripotent Stem Cells
Epigenomics
Embryonic Stem Cells
DNA Methylation
Methylation
2010
508 Citations (Scopus)

Distinct epigenomic landscapes of pluripotent and lineage-committed human cells

Hawkins, R. D., Hon, G. C., Lee, L. K., Ngo, Q., Lister, R., Pelizzola, M., Edsall, L. E., Kuan, S., Luu, Y., Klugman, S., Antosiewicz-Bourget, J., Ye, Z., Espinoza, C., Agarwahl, S., Shen, L., Ruotti, V., Wang, W., Stewart, R., Thomson, J. A., Ecker, J. R. & 1 others, Ren, B., May 7 2010, In : Cell Stem Cell. 6, 5, p. 479-491 13 p.

Research output: Contribution to journalArticle

Epigenomics
Chromatin
DNA Methylation
Fibroblasts
Genome
426 Citations (Scopus)

Next-generation genomics: An integrative approach

Hawkins, R. D., Hon, G. C. & Ren, B., Jun 1 2010, In : Nature Reviews Genetics. 11, 7, p. 476-486 11 p.

Research output: Contribution to journalReview article

Genomics
Genome
RNA Sequence Analysis
Chromatin Immunoprecipitation
Genome-Wide Association Study
2009
125 Citations (Scopus)

Discovery and annotation of functional chromatin signatures in the human genome

Hon, G., Wang, W. & Ren, B., Nov 1 2009, In : PLoS Computational Biology. 5, 11, e1000566.

Research output: Contribution to journalArticle

Chromatin
Human Genome
exons
chromatin
Annotation
1462 Citations (Scopus)

Histone modifications at human enhancers reflect global cell-type-specific gene expression

Heintzman, N. D., Hon, G. C., Hawkins, R. D., Kheradpour, P., Stark, A., Harp, L. F., Ye, Z., Lee, L. K., Stuart, R. K., Ching, C. W., Ching, K. A., Antosiewicz-Bourget, J. E., Liu, H., Zhang, X., Green, R. D., Lobanenkov, V. V., Stewart, R., Thomson, J. A., Crawford, G. E., Kellis, M. & 1 others, Ren, B., May 7 2009, In : Nature. 459, 7243, p. 108-112 5 p.

Research output: Contribution to journalArticle

Histone Code
Gene Expression
Human Genome
Chromatin Immunoprecipitation
Human Body
2684 Citations (Scopus)

Human DNA methylomes at base resolution show widespread epigenomic differences

Lister, R., Pelizzola, M., Dowen, R. H., Hawkins, R. D., Hon, G., Tonti-Filippini, J., Nery, J. R., Lee, L., Ye, Z., Ngo, Q. M., Edsall, L., Antosiewicz-Bourget, J., Stewart, R., Ruotti, V., Millar, A. H., Thomson, J. A., Ren, B. & Ecker, J. R., Nov 19 2009, In : Nature. 462, 7271, p. 315-322 8 p.

Research output: Contribution to journalArticle

Epigenomics
Methylation
Cytosine
DNA
Embryonic Stem Cells
153 Citations (Scopus)

Predictive chromatin signatures in the mammalian genome

Hon, G. C., Hawkins, R. D. & Ren, B., Oct 15 2009, In : Human Molecular Genetics. 18, R2

Research output: Contribution to journalArticle

Histone Code
Chromatin
Genome
Nucleosomes
Human Genome
2008
104 Citations (Scopus)

ChromaSig: A probabilistic approach to finding common chromatin signatures in the human genome

Hon, G., Ren, B. & Wang, W., Oct 1 2008, In : PLoS Computational Biology. 4, 10, e1000201.

Research output: Contribution to journalArticle

Chromatin
Probabilistic Approach
Human Genome
chromatin
genomics
2007
1936 Citations (Scopus)

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

Heintzman, N. D., Stuart, R. K., Hon, G., Fu, Y., Ching, C. W., Hawkins, R. D., Barrera, L. O., Van Calcar, S., Qu, C., Ching, K. A., Wang, W., Weng, Z., Green, R. D., Crawford, G. E. & Ren, B., Mar 1 2007, In : Nature Genetics. 39, 3, p. 311-318 8 p.

Research output: Contribution to journalArticle

Human Genome
Chromatin
Histone Code
Carnitine
Nucleosomes
3549 Citations (Scopus)

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P. & 291 others, Boyle, P. J., Cao, H., Carter, N. P., Clelland, G. K., Davis, S., Day, N., Dhami, P., Dillon, S. C., Dorschner, M. O., Fiegler, H., Giresi, P. G., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K. D., Johnson, B. E., Johnson, E. M., Frum, T. T., Rosenzweig, E. R., Karnani, N., Lee, K., Lefebvre, G. C., Navas, P. A., Neri, F., Parker, S. C. J., Sabo, P. J., Sandstrom, R., Shafer, A., Vetrie, D., Weaver, M., Wilcox, S., Yu, M., Collins, F. S., Dekker, J., Lieb, J. D., Tullius, T. D., Crawford, G. E., Sunyaev, S., Noble, W. S., Dunham, I., Denoeud, F., Reymond, A., Kapranov, P., Rozowsky, J., Zheng, D., Castelo, R., Frankish, A., Harrow, J., Ghosh, S., Sandelin, A., Hofacker, I. L., Baertsch, R., Keefe, D., Dike, S., Cheng, J., Hirsch, H. A., Sekinger, E. A., Lagarde, J., Abril, J. F., Shahab, A., Flamm, C., Fried, C., Hackermüller, J., Hertel, J., Lindemeyer, M., Missal, K., Tanzer, A., Washietl, S., Korbel, J., Emanuelsson, O., Pedersen, J. S., Holroyd, N., Taylor, R., Swarbreck, D., Matthews, N., Dickson, M. C., Thomas, D. J., Weirauch, M. T., Gilbert, J., Drenkow, J., Bell, I., Zhao, X., Srinivasan, K. G., Sung, W. K., Ooi, H. S., Chiu, K. P., Foissac, S., Alioto, T., Brent, M., Pachter, L., Tress, M. L., Valencia, A., Choo, S. W., Choo, C. Y., Ucla, C., Manzano, C., Wyss, C., Cheung, E., Clark, T. G., Brown, J. B., Ganesh, M., Patel, S., Tammana, H., Chrast, J., Henrichsen, C. N., Kai, C., Kawai, J., Nagalakshmi, U., Wu, J., Lian, Z., Lian, J., Newburger, P., Zhang, X., Bickel, P., Mattick, J. S., Carninci, P., Hayashizaki, Y., Weissman, S., Hubbard, T., Myers, R. M., Rogers, J., Stadler, P. F., Lowe, T. M., Wei, C. L., Ruan, Y., Struhl, K., Gerstein, M., Antonarakis, S. E., Fu, Y., Green, E. D., Karaöz, U., Siepel, A., Taylor, J., Liefer, L. A., Wetterstrand, K. A., Good, P. J., Feingold, E. A., Guyer, M. S., Cooper, G. M., Asimenos, G., Dewey, C. N., Hou, M., Nikolaev, S., Montoya-Burgos, J. I., Löytynoja, A., Whelan, S., Pardi, F., Massingham, T., Huang, H., Zhang, N. R., Holmes, I., Mullikin, J. C., Ureta-Vidal, A., Paten, B., Seringhaus, M., Church, D., Rosenbloom, K., Kent, W. J., Stone, E. A., Batzoglou, S., Goldman, N., Hardison, R. C., Haussler, D., Miller, W., Sidow, A., Trinklein, N. D., Zhang, Z. D., Barrera, L., Stuart, R., King, D. C., Ameur, A., Enroth, S., Bieda, M. C., Kim, J., Bhinge, A. A., Jiang, N., Liu, J., Yao, F., Vega, V. B., Lee, C. W. H., Ng, P., Yang, A., Moqtaderi, Z., Zhu, Z., Xu, X., Squazzo, S., Oberley, M. J., Inman, D., Singer, M. A., Richmond, T. A., Munn, K. J., Rada-Iglesias, A., Wallerman, O., Komorowski, J., Fowler, J. C., Couttet, P., Bruce, A. W., Dovey, O. M., Ellis, P. D., Langford, C. F., Nix, D. A., Euskirchen, G., Hartman, S., Urban, A. E., Kraus, P., Van Calcar, S., Heintzman, N., Hoon Kim, T., Wang, K., Qu, C., Hon, G., Luna, R., Glass, C. K., Rosenfeld, M. G., Aldred, S. F., Cooper, S. J., Halees, A., Lin, J. M., Shulha, H. P., Zhang, X., Xu, M., Haidar, J. N. S., Yu, Y., Iyer, V. R., Green, R. D., Wadelius, C., Farnham, P. J., Ren, B., Harte, R. A., Hinrichs, A. S., Trumbower, H., Clawson, H., Hillman-Jackson, J., Zweig, A. S., Smith, K., Thakkapallayil, A., Barber, G., Kuhn, R. M., Karolchik, D., Armengol, L., Bird, C. P., De Bakker, P. I. W., Kern, A. D., Lopez-Bigas, N., Martin, J. D., Stranger, B. E., Woodroffe, A., Davydov, E., Dimas, A., Eyras, E., Hallgrímsdóttir, I. B., Huppert, J., Zody, M. C., Abecasis, G. R., Estivill, X., Bouffard, G. G., Guan, X., Hansen, N. F., Idol, J. R., Maduro, V. V. B., Maskeri, B., McDowell, J. C., Park, M., Thomas, P. J., Young, A. C., Blakesley, R. W., Muzny, D. M., Sodergren, E., Wheeler, D. A., Worley, K. C., Jiang, H., Weinstock, G. M., Gibbs, R. A., Graves, T., Fulton, R., Mardis, E. R., Wilson, R. K., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D. B., Chang, J. L., Lindblad-Toh, K., Lander, E. S., Koriabine, M., Nefedov, M., Osoegawa, K., Yoshinaga, Y., Zhu, B. & De Jong, P. J., Jun 14 2007, In : Nature. 447, 7146, p. 799-816 18 p.

Research output: Contribution to journalArticle

Human Genome
Chromatin
Histone Code
Transcription Initiation Site
DNA Replication
2006
255 Citations (Scopus)

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae

Reguly, T., Breitkreutz, A., Boucher, L., Breitkreutz, B. J., Hon, G. C., Myers, C. L., Parsons, A., Friesen, H., Oughtred, R., Tong, A., Stark, C., Ho, Y., Botstein, D., Andrews, B., Boone, C., Troyanskya, O. G., Ideker, T., Dolinski, K., Batada, N. N. & Tyers, M., Dec 1 2006, In : Journal of Biology. 5, 11.

Research output: Contribution to journalArticle

Yeast
Saccharomyces cerevisiae
Throughput
Proteins
proteins
2004
456 Citations (Scopus)

The ASTRAL Compendium in 2004

Chandonia, J. M., Hon, G., Walker, N. S., Lo Conte, L., Koehl, P., Levitt, M. & Brenner, S. E., Jan 1 2004, In : Nucleic Acids Research. 32, DATABASE ISS.

Research output: Contribution to journalArticle

Databases
Information Storage and Retrieval
Proteins
Protein Domains
5950 Citations (Scopus)

WebLogo: A sequence logo generator

Crooks, G. E., Hon, G., Chandonia, J. M. & Brenner, S. E., Jun 1 2004, In : Genome Research. 14, 6, p. 1188-1190 3 p.

Research output: Contribution to journalArticle

Position-Specific Scoring Matrices
Sequence Alignment
Consensus Sequence
Nucleic Acids
Amino Acids