Assaying autophagic activity in transgenic GFP-Lc3 and GFP-Gabarap zebrafish embryos

Congcong He, Clinton R. Bartholomew, Weibin Zhou, Daniel J. Klionsky

Research output: Contribution to journalArticle

92 Citations (Scopus)

Abstract

Autophagy mediates the bulk turnover of cytoplasmic constituents in lysosomes. During embryonic development in animals, a dramatic degradation of yolk proteins and synthesis of zygotic proteins takes place, leading to intracellular remodeling and cellular differentiation. Zebrafish represents a unique system to study autophagy due in part to its rapid embryonic development relative to other vertebrates. The technical advantages of this organism make it uniquely suited to various studies including high-throughput drug screens. To study autophagy in zebrafish, we identified two zebrafish Atg8 homologs, lc3 and gabarap, and generated two transgenic zebrafish lines expressing GFP-tagged versions of the corresponding proteins. Similar to yeast Atg8 and mammalian LC3, zebrafish Lc3 undergoes post-translational modification starting at the pharyngula stage during embryonic development. We observed a high level of autophagy activity in zebrafish embryos, which can be further upregulated by the TOR inhibitor rapamycin or the calpain inhibitor calpeptin. In addition, zebrafish Gabarap accumulates within lysosomes upon autophagy induction. Thus, we established a convenient zebrafish tool to assay autophagic activity during embryogenesis in vivo.

Original languageEnglish (US)
Pages (from-to)520-526
Number of pages7
JournalAutophagy
Volume5
Issue number4
DOIs
StatePublished - May 16 2009

Fingerprint

Zebrafish
Embryonic Structures
Autophagy
Embryonic Development
Lysosomes
Egg Proteins
Sirolimus
Post Translational Protein Processing
Vertebrates
Proteins
Yeasts
Pharmaceutical Preparations

Keywords

  • Embryogenesis
  • Lysosome
  • LysoTracker
  • Protein targeting
  • Stress

ASJC Scopus subject areas

  • Cell Biology
  • Molecular Biology

Cite this

Assaying autophagic activity in transgenic GFP-Lc3 and GFP-Gabarap zebrafish embryos. / He, Congcong; Bartholomew, Clinton R.; Zhou, Weibin; Klionsky, Daniel J.

In: Autophagy, Vol. 5, No. 4, 16.05.2009, p. 520-526.

Research output: Contribution to journalArticle

He, C, Bartholomew, CR, Zhou, W & Klionsky, DJ 2009, 'Assaying autophagic activity in transgenic GFP-Lc3 and GFP-Gabarap zebrafish embryos', Autophagy, vol. 5, no. 4, pp. 520-526. https://doi.org/10.4161/auto.5.4.7768
He, Congcong ; Bartholomew, Clinton R. ; Zhou, Weibin ; Klionsky, Daniel J. / Assaying autophagic activity in transgenic GFP-Lc3 and GFP-Gabarap zebrafish embryos. In: Autophagy. 2009 ; Vol. 5, No. 4. pp. 520-526.
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