Enhancement of breast CADx with unlabeled data

Andrew R. Jamieson, Maryellen L. Giger, Karen Drukker, Lorenzo L. Pesce

Research output: Contribution to journalArticle

15 Scopus citations

Abstract

Purpose: Unlabeled medical image data are abundant, yet the process of converting them into a labeled ("truth-known") database is time and resource expensive and fraught with ethical and logistics issues. The authors propose a dual-stage CADx scheme in which both labeled and unlabeled (truth-known and "truth-unknown") data are used. This study is an initial exploration of the potential for leveraging unlabeled data toward enhancing breast CADx. Methods: From a labeled ultrasound image database consisting of 1126 lesions with an empirical cancer prevalence of 14%, 200 different randomly sampled subsets were selected and the truth status of a variable number of cases was masked to the algorithm to mimic different types of labeled and unlabeled data sources. The prevalence was fixed at 50% cancerous for the labeled data and 5% cancerous for the unlabeled. In the first stage of the dual-stage CADx scheme, the authors term "transductive dimension reduction regularization" (TDR-R), both labeled and unlabeled images characterized by extracted lesion features were combined using dimension reduction (DR) techniques and mapped to a lower-dimensional representation. (The first stage ignored truth status therefore was an unsupervised algorithm.) In the second stage, the labeled data from the reduced dimension embedding were used to train a classifier toward estimating the probability of malignancy. For the first CADx stage, the authors investigated three DR approaches: Laplacian eigenmaps, t -distributed stochastic neighbor embedding (t -SNE), and principal component analysis. For the TDR-R methods, the classifier in the second stage was a supervised (i.e., utilized truth) Bayesian neural net. The dual-stage CADx schemes were compared to a single-stage scheme based on manifold regularization (MR) in a semisupervised setting via the LapSVM algorithm. Performance in terms of areas under the ROC curve (AUC) of the CADx schemes was evaluated in leave-one-out and.632+ bootstrap analyses on a by-lesion basis. Additionally, the trained algorithms were applied to an independent test data set consisting of 101 lesions with approximately 50% cancer prevalence. The difference in AUC (ΔAUC) between with and without the use of unlabeled data was computed. Results: Statistically significant differences in the average AUC value (ΔAUC) were found in many instances between training with and without unlabeled data, based on the sample set distributions generated from this particular ultrasound data set during cross-validation and using independent test set. For example, when using 100 labeled and 900 unlabeled cases and testing on the independent test set, the TDR-R methods produced average ΔAUC=0.0361 with 95% intervals [0.0301; 0.0408] (p-value≪0.0001, adjusted for multiple comparisons, but considering the test set fixed) using t -SNE and average ΔAUC=.026 [0.0227, 0.0298] (adjusted p-value≪0.0001) using Laplacian eigenmaps, while the MR-based LapSVM produced an average ΔAUC=.0381 [0.0351; 0.0405] (adjusted p-value≪0.0001). The authors also found that schemes initially obtaining lower than average performance when using labeled data only showed the most prominent increase in performance when unlabeled data were added in the first CADx stage, suggesting a regularization effect due to the injection of unlabeled data. Conclusion: The findings reveal evidence that incorporating unlabeled data information into the overall development of CADx methods may improve classifier performance by non-negligible amounts and warrants further investigation.

Original languageEnglish (US)
Pages (from-to)4155-4172
Number of pages18
JournalMedical physics
Volume37
Issue number8
DOIs
StatePublished - Aug 2010

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Keywords

  • breast cancer
  • computer-aided diagnosis
  • nonlinear dimension reduction
  • semisupervised learning
  • transductive learning
  • unlabeled data

ASJC Scopus subject areas

  • Biophysics
  • Radiology Nuclear Medicine and imaging

Cite this

Jamieson, A. R., Giger, M. L., Drukker, K., & Pesce, L. L. (2010). Enhancement of breast CADx with unlabeled data. Medical physics, 37(8), 4155-4172. https://doi.org/10.1118/1.3455704