FindGDPs: Identification of primers for labeling microbial transcriptomes for DNA microarray analysis

Robert J. Blick; Andrew T. Revel; Eric J. Hansen

doi:10.1093/bioinformatics/btg218

FindGDPs: Identification of primers for labeling microbial transcriptomes for DNA microarray analysis

Robert J. Blick, Andrew T. Revel, Eric J. Hansen

Research output: Contribution to journal › Article › peer-review

7 Scopus citations

Abstract

Summary: FindGDPs is a program that uses a greedy algorithm to quickly identify a set of genome-directed primers that specifically anneal to all of the open reading frames in a genome and that do not exhibit full-length complementarity to the members of another user-supplied set of nucleotide sequences.

Original language	English (US)
Pages (from-to)	1718-1719
Number of pages	2
Journal	Bioinformatics
Volume	19
Issue number	13
DOIs	https://doi.org/10.1093/bioinformatics/btg218
State	Published - Sep 1 2003

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/btg218

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title = "FindGDPs: Identification of primers for labeling microbial transcriptomes for DNA microarray analysis",

abstract = "Summary: FindGDPs is a program that uses a greedy algorithm to quickly identify a set of genome-directed primers that specifically anneal to all of the open reading frames in a genome and that do not exhibit full-length complementarity to the members of another user-supplied set of nucleotide sequences.",

author = "Blick, {Robert J.} and Revel, {Andrew T.} and Hansen, {Eric J.}",

note = "Funding Information: The authors thank Adel Talaat, Stephen Johnston, Harold {\textquoteleft}Skip{\textquoteright} Garner, Michael Norgard, Jonathan Lawson, and Nikki Wagner for many helpful discussions. This study was supported by U.S. Public Health Service grants AI17621, AI36344, and AI32011 to E.J.H.",

year = "2003",

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doi = "10.1093/bioinformatics/btg218",

language = "English (US)",

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T2 - Identification of primers for labeling microbial transcriptomes for DNA microarray analysis

AU - Blick, Robert J.

AU - Revel, Andrew T.

AU - Hansen, Eric J.

N1 - Funding Information: The authors thank Adel Talaat, Stephen Johnston, Harold ‘Skip’ Garner, Michael Norgard, Jonathan Lawson, and Nikki Wagner for many helpful discussions. This study was supported by U.S. Public Health Service grants AI17621, AI36344, and AI32011 to E.J.H.

PY - 2003/9/1

Y1 - 2003/9/1

N2 - Summary: FindGDPs is a program that uses a greedy algorithm to quickly identify a set of genome-directed primers that specifically anneal to all of the open reading frames in a genome and that do not exhibit full-length complementarity to the members of another user-supplied set of nucleotide sequences.

AB - Summary: FindGDPs is a program that uses a greedy algorithm to quickly identify a set of genome-directed primers that specifically anneal to all of the open reading frames in a genome and that do not exhibit full-length complementarity to the members of another user-supplied set of nucleotide sequences.

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FindGDPs: Identification of primers for labeling microbial transcriptomes for DNA microarray analysis

Abstract

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