FindGDPs

Identification of primers for labeling microbial transcriptomes for DNA microarray analysis

Robert J. Blick, Andrew T. Revel, Eric J. Hansen

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Summary: FindGDPs is a program that uses a greedy algorithm to quickly identify a set of genome-directed primers that specifically anneal to all of the open reading frames in a genome and that do not exhibit full-length complementarity to the members of another user-supplied set of nucleotide sequences.

Original languageEnglish (US)
Pages (from-to)1718-1719
Number of pages2
JournalBioinformatics
Volume19
Issue number13
DOIs
StatePublished - Sep 1 2003

Fingerprint

Microarray Analysis
DNA Microarray
Microarrays
Oligonucleotide Array Sequence Analysis
Transcriptome
Labeling
Genome
DNA
Genes
Complementarity
Nucleotides
Greedy Algorithm
Open Reading Frames

ASJC Scopus subject areas

  • Clinical Biochemistry
  • Computer Science Applications
  • Computational Theory and Mathematics

Cite this

FindGDPs : Identification of primers for labeling microbial transcriptomes for DNA microarray analysis. / Blick, Robert J.; Revel, Andrew T.; Hansen, Eric J.

In: Bioinformatics, Vol. 19, No. 13, 01.09.2003, p. 1718-1719.

Research output: Contribution to journalArticle

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