Abstract
Aim: We present the potential false-negative rate of exome sequencing for the detection of pharmacogenomic variants. Materials & Methods: Depth of coverage of 1928 pharmacogenomically relevant variant positions was ascertained from 62 exome-sequenced samples. Results: Approximately 14% of the 1928 variant locations examined had inadequate depth of coverage (<20×). The variants with inadequate coverage were predominantly located outside of protein-coding portions and included some clinically relevant variant positions, such as the warfarin VKORC1 variant. Conclusion: While the use of exome sequencing is becoming more prevalent in fundamental research, clinical trials and clinical use; there is a possibility of false-negative results. The possible quality issues such as false-negative rate should be considered with the use of exome sequencing.
Original language | English (US) |
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Pages (from-to) | 109-115 |
Number of pages | 7 |
Journal | Personalized Medicine |
Volume | 12 |
Issue number | 2 |
DOIs | |
State | Published - Mar 1 2015 |
Keywords
- exome sequencing
- pharmacogenomics
- warfarin
ASJC Scopus subject areas
- Molecular Medicine
- Pharmacology