QSAR prediction of HIV inhibition activity of styrylquinoline derivatives by genetic algorithm coupled with multiple linear regressions

Nasser Goudarzi, Mohammad Goodarzi, Tao Chen

Research output: Contribution to journalArticle

12 Citations (Scopus)

Abstract

In spite of significant progress in anti-HIV-1 therapy, current antiviral chemotherapy still suffers from deleterious side effects and emerging drug resistance. Styrylquinoline derivative compounds have been shown to inhibit IN integration activity in vitro and to block viral replication at non-toxic concentrations. To understand the pharmacophore properties of styrylquinoline derivatives and to design inhibitors of HIV-1 integrase quantitative structure-activity relationships (QSAR) were developed using a descriptor selection approach that is based on the genetic algorithm (GA). The biological activity of styrylquinoline derivative molecules was efficiently estimated and predicted with the QSAR model. The most important descriptors were selected from a set of Dragon descriptors after pre-selection to build the QSAR model, using the multiple linear regressions (MLRs). The predictive quality of the QSAR models was tested for an external set of compounds, which were not used in the model development stage. The results demonstrated that GA-MLR is a simple and fast methodology for styrylquinoline derivatives modeling.

Original languageEnglish (US)
Pages (from-to)437-443
Number of pages7
JournalMedicinal Chemistry Research
Volume21
Issue number4
DOIs
StatePublished - Apr 1 2012

Fingerprint

Quantitative Structure-Activity Relationship
Linear regression
Linear Models
Genetic algorithms
HIV
Derivatives
Chemotherapy
Bioactivity
Drug-Related Side Effects and Adverse Reactions
Drug Resistance
Antiviral Agents
HIV-1
Drug Therapy
Molecules
styrylquinoline
Pharmaceutical Preparations
Therapeutics

Keywords

  • Genetic algorithm
  • Molecular descriptors
  • Quantitative structure-activity relationship
  • Styrylquinoline derivatives

ASJC Scopus subject areas

  • Pharmacology, Toxicology and Pharmaceutics(all)
  • Organic Chemistry

Cite this

QSAR prediction of HIV inhibition activity of styrylquinoline derivatives by genetic algorithm coupled with multiple linear regressions. / Goudarzi, Nasser; Goodarzi, Mohammad; Chen, Tao.

In: Medicinal Chemistry Research, Vol. 21, No. 4, 01.04.2012, p. 437-443.

Research output: Contribution to journalArticle

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