Immunology - Hooper Lab

Research Output

2020

Xenosiderophore Utilization Promotes Bacteroides thetaiotaomicron Resilience during Colitis

Zhu, W., Winter, M. G., Spiga, L., Hughes, E. R., Chanin, R., Mulgaonkar, A., Pennington, J., Maas, M., Behrendt, C. L., Kim, J., Sun, X., Beiting, D. P., Hooper, L. V. & Winter, S. E., Mar 11 2020, In : Cell Host and Microbe. 27, 3, p. 376-388.e8

Research output: Contribution to journalArticle

2019

Epithelial retinoic acid receptor β regulates serum amyloid A expression and Vitamin A-dependent intestinal immunity

Gattu, S., Bang, Y. J., Pendse, M., Dende, C., Chara, A. L., Harris-Tryon, T., Wang, Y., Ruhn, K. A., Kuang, Z., Sockanathan, S. & Hooper, L. V., May 28 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 166, 22, p. 10911-10916 6 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Immune control of the microbiota prevents obesity

Wang, Y. & Hooper, L. V., Jul 26 2019, In : Science (New York, N.Y.). 365, 6451, p. 316-317 2 p.

Research output: Contribution to journalComment/debate

3 Scopus citations

Molecular basis for retinol binding by serum amyloid A during infection

Hu, Z., Bang, Y. J., Ruhn, K. A. & Hooper, L. V., Sep 17 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 38, p. 19077-19082 6 p.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Resistin-like Molecule α Provides Vitamin-A-Dependent Antimicrobial Protection in the Skin

Harris, T. A., Gattu, S., Propheter, D. C., Kuang, Z., Bel, S., Ruhn, K. A., Chara, A. L., Edwards, M., Zhang, C., Jo, J. H., Raj, P., Zouboulis, C. C., Kong, H. H., Segre, J. A. & Hooper, L. V., Jun 12 2019, In : Cell Host and Microbe. 25, 6, p. 777-788.e8

Research output: Contribution to journalArticle

4 Scopus citations

The intestinal microbiota programs diurnal rhythms in host metabolism through histone deacetylase 3

Kuang, Z., Wang, Y., Li, Y., Ye, C., Ruhn, K. A., Behrendt, C. L., Olson, E. N. & Hooper, L. V., Sep 27 2019, In : Science. 365, 6460, p. 1428-1434 7 p.

Research output: Contribution to journalArticle

17 Scopus citations
2018

Distinct mucosal microbial communities in infants with surgical necrotizing enterocolitis correlate with age and antibiotic exposure

Romano-Keeler, J., Shilts, M. H., Tovchigrechko, A., Wang, C., Brucker, R. M., Moore, D. J., Fonnesbeck, C., Meng, S., Correa, H., Lovvorn, H. N., Tang, Y. W., Hooper, L., Bordenstein, S. R., Das, S. R. & Weitkamp, J. H., Oct 2018, In : PloS one. 13, 10, e0206366.

Research output: Contribution to journalArticle

3 Scopus citations

Erratum: Dysbiosis-Associated Change in Host Metabolism Generates Lactate to Support Salmonella Growth (Cell Host & Microbe (2018) 23(1) (54–64.e6) (S1931312817305000) (10.1016/j.chom.2017.11.006))

Gillis, C. C., Hughes, E. R., Spiga, L., Winter, M. G., Zhu, W., Furtado de Carvalho, T., Chanin, R. B., Behrendt, C. L., Hooper, L. V., Santos, R. L. & Winter, S. E., Apr 11 2018, In : Cell Host and Microbe. 23, 4, 1 p.

Research output: Contribution to journalComment/debate

2 Scopus citations

Loss of Paneth Cell Autophagy Causes Acute Susceptibility to Toxoplasma gondii-Mediated Inflammation

Burger, E., Araujo, A., López-Yglesias, A., Rajala, M. W., Geng, L., Levine, B., Hooper, L. V., Burstein, E. & Yarovinsky, F., Feb 14 2018, In : Cell Host and Microbe. 23, 2, p. 177-190.e4

Research output: Contribution to journalArticle

32 Scopus citations

Maternal high-fat diet results in microbiota-dependent expansion of ILC3s in mice offspring

Babu, S. T., Niu, X., Raetz, M., Savani, R. C., Hooper, L. V. & Mirpuri Hathiramani, J., Oct 4 2018, In : JCI insight. 3, 19

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Murine colitis reveals a disease-associated bacteriophage community

Duerkop, B. A., Kleiner, M., Paez-Espino, D., Zhu, W., Bushnell, B., Hassell, B., Winter, S. E., Kyrpides, N. C. & Hooper, L. V., Sep 1 2018, In : Nature microbiology. 3, 9, p. 1023-1031 9 p.

Research output: Contribution to journalArticle

31 Scopus citations

Precision editing of the gut microbiota ameliorates colitis

Zhu, W., Winter, M. G., Byndloss, M. X., Spiga, L., Duerkop, B. A., Hughes, E. R., Büttner, L., De Lima Romão, E., Behrendt, C. L., Lopez, C. A., Sifuentes-Dominguez, L., Huff-Hardy, K., Wilson, R. P., Gillis, C. C., Tükel, Ç., Koh, A. Y., Burstein, E., Hooper, L. V., Bäumler, A. J. & Winter, S. E., Jan 11 2018, In : Nature. 553, 7687, p. 208-211 4 p.

Research output: Contribution to journalArticle

119 Scopus citations

Secretory autophagy of lysozyme in Paneth cells

Bel, S. & Hooper, L. V., Mar 1 2018, (Accepted/In press) In : Autophagy. p. 1-3 3 p.

Research output: Contribution to journalArticle

8 Scopus citations

Survival signal REG3α prevents crypt apoptosis to control acute gastrointestinal graft-versus-host disease

Zhao, D., Kim, Y. H., Jeong, S., Greenson, J. K., Chaudhry, M. S., Hoepting, M., Anderson, E. R., van den Brink, M. R., Peled, J. U., Gomes, A. L., Slingerland, A. E., Donovan, M. J., Harris, A. C., Levine, J. E., Ozbek, U., Hooper, L. V., Stappenbeck, T. S., Ver Heul, A., Liu, T. C., Reddy, P. & 1 others, Ferrara, J. L., Nov 1 2018, In : Journal of Clinical Investigation. 128, 11, p. 4970-4979 10 p.

Research output: Contribution to journalArticle

17 Scopus citations

The β2-adrenergic receptor controls inflammation by driving rapid IL-10 secretion

Ağaç, D., Estrada, L. D., Maples, R., Hooper, L. V. & Farrar, J. D., Jan 1 2018, (Accepted/In press) In : Brain, Behavior, and Immunity.

Research output: Contribution to journalArticle

16 Scopus citations
2017

An Oxidative Central Metabolism Enables Salmonella to Utilize Microbiota-Derived Succinate

Spiga, L., Winter, M. G., Furtado de Carvalho, T., Zhu, W., Hughes, E. R., Gillis, C. C., Behrendt, C. L., Kim, J., Chessa, D., Andrews-Polymenis, H. L., Beiting, D. P., Santos, R. L., Hooper, L. V. & Winter, S. E., Sep 13 2017, In : Cell Host and Microbe. 22, 3, p. 291-301.e6

Research output: Contribution to journalArticle

34 Scopus citations

Dysbiosis-Associated Change in Host Metabolism Generates Lactate to Support Salmonella Growth

Gillis, C. C., Hughes, E. R., Spiga, L., Winter, M. G., Zhu, W., Furtado de Carvalho, T., Chanin, R. B., Behrendt, C. L., Hooper, L. V., Santos, R. L. & Winter, S. E., Jan 1 2017, (Accepted/In press) In : Cell Host and Microbe.

Research output: Contribution to journalArticle

33 Scopus citations

IgD class switching is initiated by microbiota and limited to mucosa-associated lymphoid tissue in mice

Choi, J. H., Wang, K. W., Zhang Ph.D., D-W., Zhan, X., Wang, T., Bu, C. H., Behrendt, C. L., Zeng, M., Wang, Y., Misawa, T., Li, X., Tang, M., Zhan, X., Scott, L., Hildebrand, S., Murray, A. R., Moresco, E. M. Y., Hooper, L. V. & Beutler, B. A., Feb 14 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 7, p. E1196-E1204

Research output: Contribution to journalArticle

21 Scopus citations

Microbial Respiration and Formate Oxidation as Metabolic Signatures of Inflammation-Associated Dysbiosis

Hughes, E. R., Winter, M. G., Duerkop, B. A., Spiga, L., Furtado de Carvalho, T., Zhu, W., Gillis, C. C., Büttner, L., Smoot, M. P., Behrendt, C. L., Cherry, S., Santos, R. L., Hooper, L. V. & Winter, S. E., Feb 8 2017, In : Cell Host and Microbe. 21, 2, p. 208-219 12 p.

Research output: Contribution to journalArticle

73 Scopus citations

NOD2 Suppresses Colorectal Tumorigenesis via Downregulation of the TLR Pathways

Udden, S. M. N., Peng, L., Gan, J. L., Shelton, J. M., Malter, J. S., Hooper, L. V. & Zaki, M. H., Jun 27 2017, In : Cell Reports. 19, 13, p. 2756-2770 15 p.

Research output: Contribution to journalArticle

23 Scopus citations

Paneth cells secrete lysozyme via secretory autophagy during bacterial infection of the intestine

Bel, S., Pendse, M., Wang, Y., Ii, Y., Ruhn, K. A., Hassell, B., Leal, T., Winter, S. E., Xavier, R. J. & Hooper, L. V., Sep 8 2017, In : Science. 357, 6355, p. 1047-1052 6 p.

Research output: Contribution to journalArticle

96 Scopus citations
31 Scopus citations

The intestinal microbiota regulates body composition through NFIL3 and the circadian clock

Wang, Y., Kuang, Z., Yu, X., Ruhn, K. A., Kubo, M. & Hooper, L. V., Sep 1 2017, In : Science. 357, 6354, p. 912-916 5 p.

Research output: Contribution to journalArticle

90 Scopus citations
2016

Bacteroides fragilis type VI secretion systems use novel effector and immunity proteins to antagonize human gut Bacteroidales species

Chatzidaki-Livanis, M., Geva-Zatorsky, N., Comstock, L. E. & Hooper, L. V., Mar 29 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 13, p. 3627-3632 6 p.

Research output: Contribution to journalArticle

84 Scopus citations

Intestinal REG3 Lectins Protect against Alcoholic Steatohepatitis by Reducing Mucosa-Associated Microbiota and Preventing Bacterial Translocation

Wang, L., Fouts, D. E., Stärkel, P., Hartmann, P., Chen, P., Llorente, C., DePew, J., Moncera, K., Ho, S. B., Brenner, D. A., Hooper, L. V. & Schnabl, B., Feb 10 2016, In : Cell host & microbe. 19, 2, p. 227-239 13 p.

Research output: Contribution to journalArticle

113 Scopus citations

Molecular basis for lytic bacteriophage resistance in enterococci

Duerkop, B. A., Huo, W., Bhardwaj, P., Palmer, K. L. & Hooper, L. V., Jul 1 2016, In : mBio. 7, 4, e01304-16.

Research output: Contribution to journalArticle

24 Scopus citations

Mum's microbes boost baby's immunity

Pendse, M. & Hooper, L. V., May 5 2016, In : Nature. 533, 7601, p. 42-43 2 p.

Research output: Contribution to journalArticle

5 Scopus citations

Pulmonary Th17 antifungal immunity is regulated by the gut microbiome

McAleer, J. P., Nguyen, N. L. H., Chen, K., Kumar, P., Ricks, D. M., Binnie, M., Armentrout, R. A., Pociask, D. A., Hein, A., Yu, A., Vikram, A., Bibby, K., Umesaki, Y., Rivera, A., Sheppard, D., Ouyang, W., Hooper, L. V. & Kolls, J. K., Jul 1 2016, In : Journal of Immunology. 197, 1, p. 97-107 11 p.

Research output: Contribution to journalArticle

45 Scopus citations
2015

Activation of HIF-1α and LL-37 by commensal bacteria inhibits Candida albicans colonization

Fan, D., Coughlin, L. A., Neubauer, M. M., Kim, J., Kim, M. S., Zhan, X., Simms-Waldrip, T. R., Xie, Y., Hooper, L. V. & Koh, A., Jun 8 2015, In : Nature Medicine. 21, 7, p. 808-814 7 p.

Research output: Contribution to journalArticle

126 Scopus citations

Antimicrobial Defense of the Intestine

Mukherjee, S. & Hooper, L. V., Jan 20 2015, In : Immunity. 42, 1, p. 28-39 12 p.

Research output: Contribution to journalReview article

108 Scopus citations

Bacteria Come into Focus: New Tools for Visualizing the Microbiota

Propheter, D. C. & Hooper, L. V., Oct 14 2015, In : Cell Host and Microbe. 18, 4, p. 392-394 3 p., 1348.

Research output: Contribution to journalArticle

5 Scopus citations

Candida albicans Inhibits Pseudomonas aeruginosa Virulence through Suppression of Pyochelin and Pyoverdine Biosynthesis

Lopez-Medina, E., Fan, D., Coughlin, L. A., Ho, E. X., Lamont, I. L., Reimmann, C., Hooper, L. V. & Koh, A. Y., Aug 1 2015, In : PLoS pathogens. 11, 8, e1005129.

Research output: Contribution to journalArticle

52 Scopus citations

Cutting edge: Developmental regulation of IFN-γ production by mouse neutrophil precursor cells

Sturge, C. R., Burger, E., Raetz, M., Hooper, L. V. & Yarovinsky, F., Jul 1 2015, In : Journal of Immunology. 195, 1, p. 36-40 5 p.

Research output: Contribution to journalArticle

6 Scopus citations

Epithelial Cell Contributions to Intestinal Immunity

Hooper, L. V., 2015, In : Advances in Immunology. 126, p. 129-172 44 p.

Research output: Contribution to journalArticle

41 Scopus citations
3 Scopus citations

Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes

Kleiner, M., Hooper, L. V. & Duerkop, B. A., Jan 22 2015, In : BMC Genomics. 16, 1, 7.

Research output: Contribution to journalArticle

63 Scopus citations

Immunology: A bacterial nudge to T-cell function

Bel, S. & Hooper, L. V., Oct 15 2015, In : Nature. 526, 7573, p. 328-330 3 p.

Research output: Contribution to journalArticle

4 Scopus citations

The DNA Sensor AIM2 Maintains Intestinal Homeostasis via Regulation of Epithelial Antimicrobial Host Defense

Hu, S., Peng, L., Kwak, Y. T., Tekippe, E. M., Pasare, C., Malter, J. S., Hooper, L. V. & Zaki, M. H., Apr 3 2015, (Accepted/In press) In : Cell Reports.

Research output: Contribution to journalArticle

51 Scopus citations
2014

Antibacterial membrane attack by a pore-forming intestinal C-type lectin

Mukherjee, S., Zheng, H., Derebe, M. G., Callenberg, K. M., Partch, C. L., Rollins, D., Propheter, D. C., Rizo-Rey, J., Grabe, M., Jiang, Q. X. & Hooper, L. V., Jan 1 2014, In : Nature. 505, 7481, p. 103-107 5 p.

Research output: Contribution to journalArticle

138 Scopus citations

Innate lymphoid cells sweeten the pot: Immune cells prompt gut epithelial cells to produce carbohydrate nutrients for resident bacteria

Hooper, L. V., Sep 12 2014, In : Science. 345, 6202, p. 1248-1249 2 p.

Research output: Contribution to journalComment/debate

2 Scopus citations

Serum amyloid A is a retinol binding protein that transports retinol during bacterial infection

Derebe, M. G., Zlatkov, C. M., Gattu, S., Ruhn, K. A., Vaishnava, S., Diehl, G. E., MacMillan, J. B., Williams, N. S. & Hooper, L. V., Jul 29 2014, In : eLife. 3, July2014, p. 1-18 18 p., e03206.

Research output: Contribution to journalArticle

63 Scopus citations

The basic leucine zipper transcription factor NFIL3 directs the development of a common innate lymphoid cell precursor

Yu, X., Wang, Y., Deng Ph.D., M., Li, Y., Ruhn, K. A., Zhang, C. & Hooper, L. V., Oct 13 2014, In : eLife. 3, e04406.

Research output: Contribution to journalArticle

135 Scopus citations
2013

Intestinal epithelial autophagy is essential for host defense against invasive bacteria

Benjamin, J. L., Sumpter, R., Levine, B. & Hooper, L. V., Jun 12 2013, In : Cell Host and Microbe. 13, 6, p. 723-734 12 p.

Research output: Contribution to journalArticle

159 Scopus citations

Mei-P26 Cooperates with Bam, Bgcn and Sxl to Promote Early Germline Development in the Drosophila Ovary

Li, Y., Zhang, Q., Carreira-Rosario, A., Maines, J. Z., McKearin, D. M. & Buszczak, M., Mar 20 2013, In : PloS one. 8, 3, e58301.

Research output: Contribution to journalArticle

35 Scopus citations

Parasite-induced T H 1 cells and intestinal dysbiosis cooperate in IFN-γ-dependent elimination of Paneth cells

Raetz, M., Hwang, S. H., Wilhelm, C. L., Kirkland, D., Benson, A., Sturge, C. R., Mirpuri, J., Vaishnava, S., Hou, B., Defranco, A. L., Gilpin, C. J., Hooper, L. V. & Yarovinsky, F., Feb 1 2013, In : Nature immunology. 14, 2, p. 136-142 7 p.

Research output: Contribution to journalArticle

108 Scopus citations

Proteobacteria-specific IgA regulates maturation of the intestinal microbiota

Mirpuri, J., Raetz, M., Sturge, C. R., Wilhelm, C. L., Benson, A., Savani, R. C., Hooper, L. V. & Yarovinsky, F., Sep 25 2013, In : Gut Microbes. 5, 1

Research output: Contribution to journalArticle

94 Scopus citations

Resident viruses and their interactions with the immune system

Duerkop, B. A. & Hooper, L. V., Jul 1 2013, In : Nature immunology. 14, 7, p. 654-659 6 p.

Research output: Contribution to journalReview article

128 Scopus citations

TH17 cell differentiation is regulated by the circadian clock

Yu, X., Rollins, D., Ruhn, K. A., Stubblefield, J. J., Green, C. B., Kashiwada, M., Rothman, P. B., Takahashi, J. S. & Hooper, L. V., Jan 1 2013, In : Science. 342, 6159, p. 727-730 4 p.

Research output: Contribution to journalArticle

181 Scopus citations

Understanding the microbiota in the midst of Renaissance architecture and olive groves

Guarner, F., Hooper, L. V. & Núñez, G., Feb 1 2013, In : Nature immunology. 14, 2, p. 101-105 5 p.

Research output: Contribution to journalArticle

2 Scopus citations
2012

A composite bacteriophage alters colonization by an intestinal commensal bacterium

Duerkop, B. A., Clements, C. V., Rollins, D., Rodrigues, J. L. M. & Hooper, L. V., Oct 23 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 43, p. 17621-17626 6 p.

Research output: Contribution to journalArticle

114 Scopus citations